Hb_000941_100

Information

Type -
Description -
Location Contig941: 111752-113293
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05950g
description POPTRDRAFT_576387; thioredoxin-like 5 mRNA family protein
nr
ID XP_002322732.2
description thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
swissprot
ID Q9FG36
description Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3
trembl
ID B9IIA5
description Thioredoxin-like 5 mRNA family protein OS=Populus trichocarpa GN=POPTR_0016s05950g PE=4 SV=2
Gene Ontology
ID GO:0009570
description thioredoxin-like 3- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63173: 111834-113209
cDNA
(Sanger)
(ID:Location)		 022_B03.ab1: 111899-113024 , 028_P24.ab1: 112420-113194

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000941_100 0.0 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
2 Hb_003053_110 0.0516901971 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
3 Hb_048093_010 0.0610960874 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
4 Hb_001195_770 0.0638837933 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
5 Hb_012150_030 0.0648816124 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_006907_060 0.0671682466 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
7 Hb_005539_010 0.0729094722 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
8 Hb_008705_020 0.0733915083 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
9 Hb_001946_160 0.0742655308 - - putative chaperon P13.9 [Castanea sativa]
10 Hb_000032_500 0.0761408562 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
11 Hb_000480_040 0.0762723981 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
12 Hb_001438_010 0.0813446621 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
13 Hb_005276_010 0.0824924225 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
14 Hb_006538_120 0.085388957 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
15 Hb_033312_010 0.0861500136 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_011861_050 0.0862424943 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
17 Hb_134849_010 0.0867385082 - - ATP synthase subunit d, putative [Ricinus communis]
18 Hb_005511_140 0.0874863464 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
19 Hb_007741_110 0.087781793 - - -
20 Hb_000108_020 0.0881347313 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]

Gene co-expression network

sample Hb_000941_100 Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_000941_100--Hb_003053_110 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000941_100--Hb_001195_770 Hb_012150_030 Hb_012150_030 Hb_000941_100--Hb_012150_030 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_003053_110--Hb_012150_030 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_003053_110--Hb_001195_770 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_048093_010--Hb_003053_110 Hb_048093_010--Hb_012150_030 Hb_156850_100 Hb_156850_100 Hb_048093_010--Hb_156850_100 Hb_000291_180 Hb_000291_180 Hb_048093_010--Hb_000291_180 Hb_048093_010--Hb_134849_010 Hb_001195_770--Hb_008705_020 Hb_000816_200 Hb_000816_200 Hb_001195_770--Hb_000816_200 Hb_001195_770--Hb_006907_060 Hb_002762_110 Hb_002762_110 Hb_001195_770--Hb_002762_110 Hb_004452_120 Hb_004452_120 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_012150_030--Hb_134849_010 Hb_002631_240 Hb_002631_240 Hb_006907_060--Hb_002631_240 Hb_006907_060--Hb_003053_110 Hb_073973_090 Hb_073973_090 Hb_006907_060--Hb_073973_090 Hb_006907_060--Hb_008705_020 Hb_006538_120 Hb_006538_120 Hb_005539_010--Hb_006538_120 Hb_000212_440 Hb_000212_440 Hb_005539_010--Hb_000212_440 Hb_001935_100 Hb_001935_100 Hb_005539_010--Hb_001935_100 Hb_000227_170 Hb_000227_170 Hb_005539_010--Hb_000227_170 Hb_005539_010--Hb_012150_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7722 12.4686 33.8462 23.8706 11.8225 13.9208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7379 18.2106 12.8167 12.8659 52.0229

CAGE analysis