Hb_134849_010

Information

Type -
Description -
Location Contig134849: 454-1168
Sequence    

Annotation

kegg
ID rcu:RCOM_0397710
description ATP synthase subunit d, putative (EC:3.6.3.14)
nr
ID XP_002532689.1
description ATP synthase subunit d, putative [Ricinus communis]
swissprot
ID Q9XGM1
description V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D PE=1 SV=2
trembl
ID B9T370
description ATP synthase subunit d, putative OS=Ricinus communis GN=RCOM_0397710 PE=4 SV=1
Gene Ontology
ID GO:0000325
description v-type proton atpase subunit d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134849_010 0.0 - - ATP synthase subunit d, putative [Ricinus communis]
2 Hb_003053_110 0.0595513823 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
3 Hb_012150_030 0.0611060187 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_000032_500 0.066061713 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
5 Hb_002774_190 0.0714306125 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
6 Hb_033312_010 0.0781518718 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_048093_010 0.0781646935 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
8 Hb_008705_020 0.0817247268 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
9 Hb_028487_070 0.0818952576 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005260_030 0.0819713144 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
11 Hb_010863_050 0.0829142563 - - OTU domain-containing protein 6B, putative [Ricinus communis]
12 Hb_012733_040 0.0859249932 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
13 Hb_004452_120 0.0859369091 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
14 Hb_015099_030 0.0861427815 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
15 Hb_000941_100 0.0867385082 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
16 Hb_000212_120 0.0870074055 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
17 Hb_025194_050 0.0914076762 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
18 Hb_000200_010 0.0928403008 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
19 Hb_073973_090 0.093415971 - - Aminotransferase ybdL, putative [Ricinus communis]
20 Hb_005731_160 0.0937171877 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_134849_010 Hb_134849_010 Hb_003053_110 Hb_003053_110 Hb_134849_010--Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_134849_010--Hb_012150_030 Hb_000032_500 Hb_000032_500 Hb_134849_010--Hb_000032_500 Hb_002774_190 Hb_002774_190 Hb_134849_010--Hb_002774_190 Hb_033312_010 Hb_033312_010 Hb_134849_010--Hb_033312_010 Hb_048093_010 Hb_048093_010 Hb_134849_010--Hb_048093_010 Hb_003053_110--Hb_012150_030 Hb_000941_100 Hb_000941_100 Hb_003053_110--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_003053_110--Hb_001195_770 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_004452_120 Hb_004452_120 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_012150_030--Hb_048093_010 Hb_012150_030--Hb_000941_100 Hb_001677_220 Hb_001677_220 Hb_000032_500--Hb_001677_220 Hb_001105_040 Hb_001105_040 Hb_000032_500--Hb_001105_040 Hb_000032_500--Hb_000941_100 Hb_000200_010 Hb_000200_010 Hb_000032_500--Hb_000200_010 Hb_000032_500--Hb_008705_020 Hb_000212_120 Hb_000212_120 Hb_002774_190--Hb_000212_120 Hb_028487_070 Hb_028487_070 Hb_002774_190--Hb_028487_070 Hb_032202_220 Hb_032202_220 Hb_002774_190--Hb_032202_220 Hb_000375_390 Hb_000375_390 Hb_002774_190--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_002774_190--Hb_000061_180 Hb_114310_070 Hb_114310_070 Hb_033312_010--Hb_114310_070 Hb_013405_080 Hb_013405_080 Hb_033312_010--Hb_013405_080 Hb_001660_120 Hb_001660_120 Hb_033312_010--Hb_001660_120 Hb_033312_010--Hb_002774_190 Hb_033312_010--Hb_000032_500 Hb_048093_010--Hb_000941_100 Hb_048093_010--Hb_003053_110 Hb_156850_100 Hb_156850_100 Hb_048093_010--Hb_156850_100 Hb_000291_180 Hb_000291_180 Hb_048093_010--Hb_000291_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.10559 9.86233 18.0784 18.3123 7.35195 8.53264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0484 13.0262 6.25685 14.4023 30.8244

CAGE analysis