Hb_001105_040

Information

Type -
Description -
Location Contig1105: 21144-24581
Sequence    

Annotation

kegg
ID rcu:RCOM_1341670
description structural molecule, putative
nr
ID XP_012083058.1
description PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8W4F1
description Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana GN=PAP10 PE=2 SV=1
trembl
ID A0A067JWX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14148 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03285: 21218-24430 , PASA_asmbl_03286: 21239-24042 , PASA_asmbl_03287: 23460-23638 , PASA_asmbl_03288: 24107-24631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_040 0.0 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001832_200 0.0615372227 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
3 Hb_025194_050 0.0617406156 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
4 Hb_000032_500 0.0751811043 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
5 Hb_000128_060 0.0842760929 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
6 Hb_016219_010 0.0911159776 - - hypothetical protein B456_001G213800 [Gossypium raimondii]
7 Hb_008705_020 0.0919470096 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
8 Hb_134849_010 0.0947589517 - - ATP synthase subunit d, putative [Ricinus communis]
9 Hb_001882_010 0.0962974357 - - -
10 Hb_016219_030 0.0970463017 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000270_480 0.0983788381 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
12 Hb_000200_010 0.0998893239 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
13 Hb_000108_020 0.0999851832 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
14 Hb_068079_010 0.101122229 - - -
15 Hb_000617_250 0.1028031869 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
16 Hb_055690_010 0.1048334765 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
17 Hb_006907_060 0.1049712213 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
18 Hb_048093_010 0.1052444979 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
19 Hb_028487_070 0.1068255577 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006916_050 0.10690085 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]

Gene co-expression network

sample Hb_001105_040 Hb_001105_040 Hb_001832_200 Hb_001832_200 Hb_001105_040--Hb_001832_200 Hb_025194_050 Hb_025194_050 Hb_001105_040--Hb_025194_050 Hb_000032_500 Hb_000032_500 Hb_001105_040--Hb_000032_500 Hb_000128_060 Hb_000128_060 Hb_001105_040--Hb_000128_060 Hb_016219_010 Hb_016219_010 Hb_001105_040--Hb_016219_010 Hb_008705_020 Hb_008705_020 Hb_001105_040--Hb_008705_020 Hb_001882_010 Hb_001882_010 Hb_001832_200--Hb_001882_010 Hb_001832_200--Hb_025194_050 Hb_010863_050 Hb_010863_050 Hb_001832_200--Hb_010863_050 Hb_000108_020 Hb_000108_020 Hb_001832_200--Hb_000108_020 Hb_068079_010 Hb_068079_010 Hb_001832_200--Hb_068079_010 Hb_000617_250 Hb_000617_250 Hb_025194_050--Hb_000617_250 Hb_000270_480 Hb_000270_480 Hb_025194_050--Hb_000270_480 Hb_007012_030 Hb_007012_030 Hb_025194_050--Hb_007012_030 Hb_025194_050--Hb_068079_010 Hb_134849_010 Hb_134849_010 Hb_000032_500--Hb_134849_010 Hb_001677_220 Hb_001677_220 Hb_000032_500--Hb_001677_220 Hb_000941_100 Hb_000941_100 Hb_000032_500--Hb_000941_100 Hb_000200_010 Hb_000200_010 Hb_000032_500--Hb_000200_010 Hb_000032_500--Hb_008705_020 Hb_000088_260 Hb_000088_260 Hb_000128_060--Hb_000088_260 Hb_000128_060--Hb_000270_480 Hb_073973_090 Hb_073973_090 Hb_000128_060--Hb_073973_090 Hb_000023_360 Hb_000023_360 Hb_000128_060--Hb_000023_360 Hb_001511_090 Hb_001511_090 Hb_000128_060--Hb_001511_090 Hb_016219_030 Hb_016219_030 Hb_016219_010--Hb_016219_030 Hb_001578_020 Hb_001578_020 Hb_016219_010--Hb_001578_020 Hb_001951_060 Hb_001951_060 Hb_016219_010--Hb_001951_060 Hb_001301_280 Hb_001301_280 Hb_016219_010--Hb_001301_280 Hb_001242_120 Hb_001242_120 Hb_016219_010--Hb_001242_120 Hb_001195_770 Hb_001195_770 Hb_008705_020--Hb_001195_770 Hb_003053_110 Hb_003053_110 Hb_008705_020--Hb_003053_110 Hb_030736_040 Hb_030736_040 Hb_008705_020--Hb_030736_040 Hb_000167_110 Hb_000167_110 Hb_008705_020--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_008705_020--Hb_006907_060 Hb_008705_020--Hb_000941_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5132 3.98092 9.11347 7.64719 3.04814 3.02163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.98606 4.05416 1.77635 5.4584 11.9202

CAGE analysis