Hb_016219_010

Information

Type -
Description -
Location Contig16219: 22859-25769
Sequence    

Annotation

kegg
ID osa:4328451
description Os02g0173100
nr
ID KJB10651.1
description hypothetical protein B456_001G213800 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2Q2D2
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G213800 PE=4 SV=1
Gene Ontology
ID GO:0009570
description cytochrome p450 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14649: 22895-23773 , PASA_asmbl_14650: 25214-47571 , PASA_asmbl_14651: 25260-30456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016219_010 0.0 - - hypothetical protein B456_001G213800 [Gossypium raimondii]
2 Hb_001105_040 0.0911159776 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_016219_030 0.0996428787 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001578_020 0.1081425756 - - Protein virR, putative [Ricinus communis]
5 Hb_001951_060 0.109047445 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
6 Hb_001301_280 0.1107472535 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001242_120 0.1162742273 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
8 Hb_000438_140 0.1165501316 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
9 Hb_012733_040 0.1177176981 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
10 Hb_001832_200 0.1178303594 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
11 Hb_008375_010 0.1178767672 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
12 Hb_008147_080 0.1195116756 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
13 Hb_015099_030 0.1203643553 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
14 Hb_000200_010 0.1209477108 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
15 Hb_004957_030 0.1213373874 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
16 Hb_134849_010 0.1239862298 - - ATP synthase subunit d, putative [Ricinus communis]
17 Hb_055690_010 0.124344707 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
18 Hb_011671_120 0.1250269192 - - hypothetical protein JCGZ_26275 [Jatropha curcas]
19 Hb_025194_050 0.1251680025 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
20 Hb_009078_030 0.1254601114 - - hypothetical protein PRUPE_ppa016992mg, partial [Prunus persica]

Gene co-expression network

sample Hb_016219_010 Hb_016219_010 Hb_001105_040 Hb_001105_040 Hb_016219_010--Hb_001105_040 Hb_016219_030 Hb_016219_030 Hb_016219_010--Hb_016219_030 Hb_001578_020 Hb_001578_020 Hb_016219_010--Hb_001578_020 Hb_001951_060 Hb_001951_060 Hb_016219_010--Hb_001951_060 Hb_001301_280 Hb_001301_280 Hb_016219_010--Hb_001301_280 Hb_001242_120 Hb_001242_120 Hb_016219_010--Hb_001242_120 Hb_001832_200 Hb_001832_200 Hb_001105_040--Hb_001832_200 Hb_025194_050 Hb_025194_050 Hb_001105_040--Hb_025194_050 Hb_000032_500 Hb_000032_500 Hb_001105_040--Hb_000032_500 Hb_000128_060 Hb_000128_060 Hb_001105_040--Hb_000128_060 Hb_008705_020 Hb_008705_020 Hb_001105_040--Hb_008705_020 Hb_000189_450 Hb_000189_450 Hb_016219_030--Hb_000189_450 Hb_000438_140 Hb_000438_140 Hb_016219_030--Hb_000438_140 Hb_002053_010 Hb_002053_010 Hb_016219_030--Hb_002053_010 Hb_001789_200 Hb_001789_200 Hb_016219_030--Hb_001789_200 Hb_016219_030--Hb_000032_500 Hb_016219_030--Hb_001105_040 Hb_004440_060 Hb_004440_060 Hb_001578_020--Hb_004440_060 Hb_004644_030 Hb_004644_030 Hb_001578_020--Hb_004644_030 Hb_055619_010 Hb_055619_010 Hb_001578_020--Hb_055619_010 Hb_007534_050 Hb_007534_050 Hb_001578_020--Hb_007534_050 Hb_008147_080 Hb_008147_080 Hb_001578_020--Hb_008147_080 Hb_002811_010 Hb_002811_010 Hb_001578_020--Hb_002811_010 Hb_001951_060--Hb_001301_280 Hb_034083_020 Hb_034083_020 Hb_001951_060--Hb_034083_020 Hb_002486_080 Hb_002486_080 Hb_001951_060--Hb_002486_080 Hb_007416_070 Hb_007416_070 Hb_001951_060--Hb_007416_070 Hb_000365_010 Hb_000365_010 Hb_001951_060--Hb_000365_010 Hb_005016_010 Hb_005016_010 Hb_001951_060--Hb_005016_010 Hb_001301_280--Hb_002486_080 Hb_001301_280--Hb_000365_010 Hb_011671_120 Hb_011671_120 Hb_001301_280--Hb_011671_120 Hb_001301_280--Hb_007416_070 Hb_001619_060 Hb_001619_060 Hb_001301_280--Hb_001619_060 Hb_012733_040 Hb_012733_040 Hb_001242_120--Hb_012733_040 Hb_005725_130 Hb_005725_130 Hb_001242_120--Hb_005725_130 Hb_002928_090 Hb_002928_090 Hb_001242_120--Hb_002928_090 Hb_002301_100 Hb_002301_100 Hb_001242_120--Hb_002301_100 Hb_001051_050 Hb_001051_050 Hb_001242_120--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_001242_120--Hb_003878_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.861582 2.15869 5.64268 7.19721 1.98379 3.30095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74815 3.73661 1.23829 5.83548 8.77396

CAGE analysis