Hb_001789_200

Information

Type -
Description -
Location Contig1789: 196029-199266
Sequence    

Annotation

kegg
ID rcu:RCOM_1583030
description hypothetical protein
nr
ID XP_012090212.1
description PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
swissprot
ID Q94G16
description Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum GN=TATB PE=1 SV=1
trembl
ID B9RIV4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1583030 PE=4 SV=1
Gene Ontology
ID GO:0016020
description sec-independent protein translocase protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17231: 196142-199332 , PASA_asmbl_17232: 198033-198438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_200 0.0 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
2 Hb_002053_010 0.0525313082 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
3 Hb_000388_060 0.0737747194 - - fructokinase [Manihot esculenta]
4 Hb_001369_790 0.088831277 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
5 Hb_016219_030 0.0901304969 - - cytochrome P450, putative [Ricinus communis]
6 Hb_004644_030 0.0932078577 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
7 Hb_007441_310 0.0943699282 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
8 Hb_001124_180 0.0961854066 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
9 Hb_004440_060 0.0995704745 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_008375_010 0.1002685071 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
11 Hb_000983_070 0.1014825417 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001711_120 0.1017513891 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
13 Hb_008695_200 0.1019172542 - - Protein grpE, putative [Ricinus communis]
14 Hb_008147_080 0.1022818034 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
15 Hb_000816_200 0.103021035 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
16 Hb_000622_290 0.1034821394 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
17 Hb_001898_180 0.1038495899 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
18 Hb_003875_030 0.1045237328 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
19 Hb_001578_020 0.1050084999 - - Protein virR, putative [Ricinus communis]
20 Hb_002075_030 0.105664804 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001789_200 Hb_001789_200 Hb_002053_010 Hb_002053_010 Hb_001789_200--Hb_002053_010 Hb_000388_060 Hb_000388_060 Hb_001789_200--Hb_000388_060 Hb_001369_790 Hb_001369_790 Hb_001789_200--Hb_001369_790 Hb_016219_030 Hb_016219_030 Hb_001789_200--Hb_016219_030 Hb_004644_030 Hb_004644_030 Hb_001789_200--Hb_004644_030 Hb_007441_310 Hb_007441_310 Hb_001789_200--Hb_007441_310 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_002053_010--Hb_016219_030 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080 Hb_000388_060--Hb_002053_010 Hb_008147_080 Hb_008147_080 Hb_000388_060--Hb_008147_080 Hb_000983_070 Hb_000983_070 Hb_000388_060--Hb_000983_070 Hb_001124_180 Hb_001124_180 Hb_000388_060--Hb_001124_180 Hb_001898_180 Hb_001898_180 Hb_000388_060--Hb_001898_180 Hb_007192_030 Hb_007192_030 Hb_001369_790--Hb_007192_030 Hb_001369_790--Hb_004440_060 Hb_000392_550 Hb_000392_550 Hb_001369_790--Hb_000392_550 Hb_001369_790--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290 Hb_000189_450 Hb_000189_450 Hb_016219_030--Hb_000189_450 Hb_000438_140 Hb_000438_140 Hb_016219_030--Hb_000438_140 Hb_000032_500 Hb_000032_500 Hb_016219_030--Hb_000032_500 Hb_001105_040 Hb_001105_040 Hb_016219_030--Hb_001105_040 Hb_002762_110 Hb_002762_110 Hb_004644_030--Hb_002762_110 Hb_000077_150 Hb_000077_150 Hb_004644_030--Hb_000077_150 Hb_004644_030--Hb_000622_290 Hb_004644_030--Hb_008147_080 Hb_003053_110 Hb_003053_110 Hb_004644_030--Hb_003053_110 Hb_001578_020 Hb_001578_020 Hb_004644_030--Hb_001578_020 Hb_008375_010 Hb_008375_010 Hb_007441_310--Hb_008375_010 Hb_032631_070 Hb_032631_070 Hb_007441_310--Hb_032631_070 Hb_000585_110 Hb_000585_110 Hb_007441_310--Hb_000585_110 Hb_000397_150 Hb_000397_150 Hb_007441_310--Hb_000397_150 Hb_055690_010 Hb_055690_010 Hb_007441_310--Hb_055690_010 Hb_001195_770 Hb_001195_770 Hb_007441_310--Hb_001195_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.60899 2.82817 15.0629 14.2204 1.88589 4.66131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.08425 10.4483 5.3592 7.48532 24.6671

CAGE analysis