Hb_001124_180

Information

Type -
Description -
Location Contig1124: 193546-194187
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_011090851.1
description PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID A0A0A9N590
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0009570
description nad -binding rossmann-fold superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03818: 193547-206675
cDNA
(Sanger)
(ID:Location)		 014_G02.ab1: 193547-205786 , 025_N19.ab1: 193547-205132 , 035_E14.ab1: 193547-204927 , 053_L19.ab1: 193547-205104

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_180 0.0 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
2 Hb_005489_090 0.0634350216 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
3 Hb_003935_080 0.0830367136 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
4 Hb_005725_220 0.0836253662 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
5 Hb_000042_290 0.0842240824 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
6 Hb_000594_100 0.0937117516 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
7 Hb_000176_010 0.0944618098 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
8 Hb_001124_190 0.0952604983 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001789_200 0.0961854066 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
10 Hb_002053_010 0.0995456451 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
11 Hb_000388_060 0.099715991 - - fructokinase [Manihot esculenta]
12 Hb_002374_300 0.0998176419 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
13 Hb_000627_300 0.1009921523 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
14 Hb_010577_040 0.1019940016 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
15 Hb_001711_120 0.1098642587 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
16 Hb_005846_030 0.1125562754 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
17 Hb_009780_050 0.1159695678 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
18 Hb_000723_290 0.1165079227 - - calcium lipid binding protein, putative [Ricinus communis]
19 Hb_000983_070 0.116568368 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000510_030 0.1191892612 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]

Gene co-expression network

sample Hb_001124_180 Hb_001124_180 Hb_005489_090 Hb_005489_090 Hb_001124_180--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_000042_290 Hb_000042_290 Hb_001124_180--Hb_000042_290 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_000176_010 Hb_000176_010 Hb_001124_180--Hb_000176_010 Hb_005489_090--Hb_003935_080 Hb_005489_090--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_005489_090--Hb_010577_040 Hb_005489_090--Hb_005725_220 Hb_001792_030 Hb_001792_030 Hb_005489_090--Hb_001792_030 Hb_003935_080--Hb_000594_100 Hb_003935_080--Hb_010577_040 Hb_003935_080--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_003935_080--Hb_000866_050 Hb_000164_140 Hb_000164_140 Hb_005725_220--Hb_000164_140 Hb_005846_030 Hb_005846_030 Hb_005725_220--Hb_005846_030 Hb_002078_300 Hb_002078_300 Hb_005725_220--Hb_002078_300 Hb_029920_030 Hb_029920_030 Hb_005725_220--Hb_029920_030 Hb_002150_130 Hb_002150_130 Hb_000042_290--Hb_002150_130 Hb_000042_290--Hb_005489_090 Hb_000152_480 Hb_000152_480 Hb_000042_290--Hb_000152_480 Hb_000042_290--Hb_003935_080 Hb_000042_290--Hb_000176_010 Hb_001373_130 Hb_001373_130 Hb_000594_100--Hb_001373_130 Hb_000594_100--Hb_010577_040 Hb_000983_070 Hb_000983_070 Hb_000594_100--Hb_000983_070 Hb_009780_050 Hb_009780_050 Hb_000176_010--Hb_009780_050 Hb_000627_300 Hb_000627_300 Hb_000176_010--Hb_000627_300 Hb_000176_010--Hb_002150_130 Hb_000167_050 Hb_000167_050 Hb_000176_010--Hb_000167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2652 1.03493 10.2782 6.99763 1.16686 1.32435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.90126 6.73914 3.95765 3.10652 16.757

CAGE analysis