Hb_005725_220

Information

Type -
Description -
Location Contig5725: 129552-134776
Sequence    

Annotation

kegg
ID rcu:RCOM_1586320
description hypothetical protein
nr
ID XP_012068167.1
description PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LAP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15987 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105630808

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49420: 129501-133198 , PASA_asmbl_49421: 129501-134722 , PASA_asmbl_49422: 129501-132681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_220 0.0 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
2 Hb_000164_140 0.0826089002 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_001124_180 0.0836253662 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
4 Hb_005846_030 0.0879343004 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
5 Hb_002078_300 0.0922637159 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
6 Hb_005489_090 0.0956510263 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
7 Hb_029920_030 0.1013008474 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
8 Hb_000983_070 0.1050665507 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001792_030 0.1128536859 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
10 Hb_003935_080 0.1140161041 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
11 Hb_000816_200 0.1148631578 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
12 Hb_000110_230 0.1163662505 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
13 Hb_121089_040 0.1163988062 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
14 Hb_010577_040 0.116738793 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
15 Hb_001277_100 0.1208631716 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
16 Hb_001399_010 0.1214585784 - - ATP binding protein, putative [Ricinus communis]
17 Hb_003581_290 0.1235313265 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
18 Hb_002053_010 0.1243324636 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
19 Hb_000638_160 0.1264392641 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
20 Hb_000594_100 0.1267099297 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005725_220 Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_005725_220--Hb_000164_140 Hb_001124_180 Hb_001124_180 Hb_005725_220--Hb_001124_180 Hb_005846_030 Hb_005846_030 Hb_005725_220--Hb_005846_030 Hb_002078_300 Hb_002078_300 Hb_005725_220--Hb_002078_300 Hb_005489_090 Hb_005489_090 Hb_005725_220--Hb_005489_090 Hb_029920_030 Hb_029920_030 Hb_005725_220--Hb_029920_030 Hb_005276_010 Hb_005276_010 Hb_000164_140--Hb_005276_010 Hb_000164_140--Hb_002078_300 Hb_000164_140--Hb_005846_030 Hb_000164_140--Hb_029920_030 Hb_000028_110 Hb_000028_110 Hb_000164_140--Hb_000028_110 Hb_001124_180--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001124_180--Hb_003935_080 Hb_000042_290 Hb_000042_290 Hb_001124_180--Hb_000042_290 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_000176_010 Hb_000176_010 Hb_001124_180--Hb_000176_010 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_004109_160 Hb_004109_160 Hb_002078_300--Hb_004109_160 Hb_002078_300--Hb_005846_030 Hb_001792_030 Hb_001792_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030 Hb_005489_090--Hb_003935_080 Hb_005489_090--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_005489_090--Hb_010577_040 Hb_005489_090--Hb_001792_030 Hb_000816_200 Hb_000816_200 Hb_029920_030--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_029920_030--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_029920_030--Hb_001195_770 Hb_029920_030--Hb_005276_010 Hb_000480_040 Hb_000480_040 Hb_029920_030--Hb_000480_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5574 7.76251 61.2598 39.9431 15.3612 13.1597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.1311 44.3522 38.0083 21.9308 134.793

CAGE analysis