Hb_000638_160

Information

Type -
Description -
Location Contig638: 135443-138187
Sequence    

Annotation

kegg
ID rcu:RCOM_1463260
description hypothetical protein
nr
ID XP_012076111.1
description PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KE93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12797 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52022: 135344-138174 , PASA_asmbl_52023: 135345-135989
cDNA
(Sanger)
(ID:Location)		 026_B10.ab1: 136032-138174

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_160 0.0 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
2 Hb_000167_050 0.0878192649 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
3 Hb_005846_030 0.0956103475 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
4 Hb_014834_130 0.0999484895 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
5 Hb_011689_120 0.1153631933 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
6 Hb_000622_240 0.1255718276 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
7 Hb_000462_090 0.1263006853 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
8 Hb_005725_220 0.1264392641 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
9 Hb_000164_140 0.1283746425 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_001712_020 0.1303182092 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
11 Hb_019053_060 0.1330712214 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
12 Hb_006846_150 0.133217828 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001277_100 0.1339012873 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
14 Hb_001240_010 0.1352624112 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
15 Hb_007534_050 0.1353431363 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001399_010 0.1377667498 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000487_260 0.138067781 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
18 Hb_000394_180 0.1423413163 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
19 Hb_000173_250 0.1431849179 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
20 Hb_000877_080 0.1433961197 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]

Gene co-expression network

sample Hb_000638_160 Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_000638_160--Hb_000167_050 Hb_005846_030 Hb_005846_030 Hb_000638_160--Hb_005846_030 Hb_014834_130 Hb_014834_130 Hb_000638_160--Hb_014834_130 Hb_011689_120 Hb_011689_120 Hb_000638_160--Hb_011689_120 Hb_000622_240 Hb_000622_240 Hb_000638_160--Hb_000622_240 Hb_000462_090 Hb_000462_090 Hb_000638_160--Hb_000462_090 Hb_000394_180 Hb_000394_180 Hb_000167_050--Hb_000394_180 Hb_000723_290 Hb_000723_290 Hb_000167_050--Hb_000723_290 Hb_009780_050 Hb_009780_050 Hb_000167_050--Hb_009780_050 Hb_000167_050--Hb_005846_030 Hb_000176_010 Hb_000176_010 Hb_000167_050--Hb_000176_010 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000164_140 Hb_000164_140 Hb_005846_030--Hb_000164_140 Hb_014834_130--Hb_001712_020 Hb_014834_130--Hb_005846_030 Hb_014834_130--Hb_011689_120 Hb_001301_340 Hb_001301_340 Hb_014834_130--Hb_001301_340 Hb_006846_150 Hb_006846_150 Hb_014834_130--Hb_006846_150 Hb_011689_120--Hb_006846_150 Hb_001322_110 Hb_001322_110 Hb_011689_120--Hb_001322_110 Hb_000403_070 Hb_000403_070 Hb_011689_120--Hb_000403_070 Hb_002872_050 Hb_002872_050 Hb_011689_120--Hb_002872_050 Hb_000811_070 Hb_000811_070 Hb_011689_120--Hb_000811_070 Hb_001318_260 Hb_001318_260 Hb_011689_120--Hb_001318_260 Hb_000107_570 Hb_000107_570 Hb_000622_240--Hb_000107_570 Hb_000028_110 Hb_000028_110 Hb_000622_240--Hb_000028_110 Hb_000622_240--Hb_005846_030 Hb_001435_020 Hb_001435_020 Hb_000622_240--Hb_001435_020 Hb_000622_240--Hb_000164_140 Hb_001584_200 Hb_001584_200 Hb_000462_090--Hb_001584_200 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000340_150 Hb_000340_150 Hb_000462_090--Hb_000340_150 Hb_000172_580 Hb_000172_580 Hb_000462_090--Hb_000172_580 Hb_009775_010 Hb_009775_010 Hb_000462_090--Hb_009775_010 Hb_003376_230 Hb_003376_230 Hb_000462_090--Hb_003376_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.79441 3.28164 30.5409 17.2411 7.68909 13.2128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.176 37.3078 23.0989 6.30622 54.3326

CAGE analysis