Hb_001712_020

Information

Type -
Description -
Location Contig1712: 40335-44304
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14240g
description POPTRDRAFT_658969; zinc finger family protein
nr
ID XP_012081996.1
description PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
swissprot
ID Q5SXM8
description DNL-type zinc finger protein OS=Homo sapiens GN=DNLZ PE=1 SV=1
trembl
ID B9HWP4
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s14240g PE=4 SV=2
Gene Ontology
ID GO:0008270
description dnl-type zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16005: 38781-39856 , PASA_asmbl_16006: 40466-41569
cDNA
(Sanger)
(ID:Location)		 020_K17.ab1: 40466-41186

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001712_020 0.0 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
2 Hb_000877_080 0.0941391855 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
3 Hb_005846_030 0.0944187945 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
4 Hb_011689_120 0.1062317268 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
5 Hb_006846_150 0.1069517838 - - conserved hypothetical protein [Ricinus communis]
6 Hb_014834_130 0.1108150205 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
7 Hb_000317_260 0.1232391513 - - unknown [Populus trichocarpa]
8 Hb_004951_060 0.1249983364 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
9 Hb_000487_260 0.1251667883 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
10 Hb_000622_240 0.1269840619 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
11 Hb_001558_080 0.1273837691 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000403_070 0.1279684915 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002872_050 0.1280551425 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
14 Hb_000173_250 0.1287236032 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
15 Hb_003349_030 0.1296896265 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
16 Hb_001790_030 0.130278359 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
17 Hb_000638_160 0.1303182092 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
18 Hb_000394_180 0.1303506603 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
19 Hb_001410_070 0.1323502464 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
20 Hb_004440_060 0.1328011753 - - aldose 1-epimerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001712_020 Hb_001712_020 Hb_000877_080 Hb_000877_080 Hb_001712_020--Hb_000877_080 Hb_005846_030 Hb_005846_030 Hb_001712_020--Hb_005846_030 Hb_011689_120 Hb_011689_120 Hb_001712_020--Hb_011689_120 Hb_006846_150 Hb_006846_150 Hb_001712_020--Hb_006846_150 Hb_014834_130 Hb_014834_130 Hb_001712_020--Hb_014834_130 Hb_000317_260 Hb_000317_260 Hb_001712_020--Hb_000317_260 Hb_001056_030 Hb_001056_030 Hb_000877_080--Hb_001056_030 Hb_007827_010 Hb_007827_010 Hb_000877_080--Hb_007827_010 Hb_001318_260 Hb_001318_260 Hb_000877_080--Hb_001318_260 Hb_002872_050 Hb_002872_050 Hb_000877_080--Hb_002872_050 Hb_003349_030 Hb_003349_030 Hb_000877_080--Hb_003349_030 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_005846_030--Hb_000164_140 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_011689_120--Hb_006846_150 Hb_001322_110 Hb_001322_110 Hb_011689_120--Hb_001322_110 Hb_000403_070 Hb_000403_070 Hb_011689_120--Hb_000403_070 Hb_011689_120--Hb_002872_050 Hb_000811_070 Hb_000811_070 Hb_011689_120--Hb_000811_070 Hb_011689_120--Hb_001318_260 Hb_006846_150--Hb_000811_070 Hb_006846_150--Hb_000403_070 Hb_000487_260 Hb_000487_260 Hb_006846_150--Hb_000487_260 Hb_004951_060 Hb_004951_060 Hb_006846_150--Hb_004951_060 Hb_012799_170 Hb_012799_170 Hb_006846_150--Hb_012799_170 Hb_014834_130--Hb_000638_160 Hb_014834_130--Hb_005846_030 Hb_014834_130--Hb_011689_120 Hb_001301_340 Hb_001301_340 Hb_014834_130--Hb_001301_340 Hb_014834_130--Hb_006846_150 Hb_004440_060 Hb_004440_060 Hb_000317_260--Hb_004440_060 Hb_003411_090 Hb_003411_090 Hb_000317_260--Hb_003411_090 Hb_000317_260--Hb_004951_060 Hb_007904_230 Hb_007904_230 Hb_000317_260--Hb_007904_230 Hb_003266_030 Hb_003266_030 Hb_000317_260--Hb_003266_030 Hb_001369_790 Hb_001369_790 Hb_000317_260--Hb_001369_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.07288 1.67425 5.18324 3.32989 1.65523 1.60425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.64703 7.31783 2.70716 2.00362 9.84457

CAGE analysis