Hb_007632_170

Information

Type -
Description -
Location Contig7632: 161023-161643
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20320g
description hypothetical protein
nr
ID KDP39271.1
description hypothetical protein JCGZ_01028 [Jatropha curcas]
swissprot
ID Q9FM67
description Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1
trembl
ID A0A067KSV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01028 PE=4 SV=1
Gene Ontology
ID GO:0009535
description protein tic 20- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_170 0.0 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
2 Hb_005846_030 0.0849600033 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
3 Hb_001898_180 0.0975538844 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
4 Hb_010577_040 0.1085970331 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
5 Hb_019040_030 0.1185090731 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
6 Hb_000156_210 0.1193303616 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
7 Hb_002078_300 0.1227730969 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
8 Hb_004109_160 0.1227762193 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
9 Hb_020378_060 0.1298856114 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_000723_290 0.1300328266 - - calcium lipid binding protein, putative [Ricinus communis]
11 Hb_000983_070 0.1306511473 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005725_220 0.1323958728 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
13 Hb_001124_180 0.1332593457 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
14 Hb_000164_140 0.1347816404 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_001712_020 0.1351279468 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
16 Hb_003935_080 0.1375350995 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
17 Hb_027298_010 0.1378851332 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005489_090 0.1387065442 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
19 Hb_000622_290 0.1387900638 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
20 Hb_001711_120 0.1403650713 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007632_170 Hb_007632_170 Hb_005846_030 Hb_005846_030 Hb_007632_170--Hb_005846_030 Hb_001898_180 Hb_001898_180 Hb_007632_170--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_007632_170--Hb_010577_040 Hb_019040_030 Hb_019040_030 Hb_007632_170--Hb_019040_030 Hb_000156_210 Hb_000156_210 Hb_007632_170--Hb_000156_210 Hb_002078_300 Hb_002078_300 Hb_007632_170--Hb_002078_300 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000164_140 Hb_000164_140 Hb_005846_030--Hb_000164_140 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_000983_070 Hb_000983_070 Hb_001898_180--Hb_000983_070 Hb_002053_010 Hb_002053_010 Hb_001898_180--Hb_002053_010 Hb_020378_060 Hb_020378_060 Hb_001898_180--Hb_020378_060 Hb_000189_450 Hb_000189_450 Hb_001898_180--Hb_000189_450 Hb_000622_290 Hb_000622_290 Hb_001898_180--Hb_000622_290 Hb_003935_080 Hb_003935_080 Hb_010577_040--Hb_003935_080 Hb_000723_290 Hb_000723_290 Hb_010577_040--Hb_000723_290 Hb_005489_090 Hb_005489_090 Hb_010577_040--Hb_005489_090 Hb_001621_060 Hb_001621_060 Hb_010577_040--Hb_001621_060 Hb_000594_100 Hb_000594_100 Hb_010577_040--Hb_000594_100 Hb_010577_040--Hb_020378_060 Hb_000914_100 Hb_000914_100 Hb_019040_030--Hb_000914_100 Hb_019040_030--Hb_001898_180 Hb_000077_150 Hb_000077_150 Hb_019040_030--Hb_000077_150 Hb_019040_030--Hb_000156_210 Hb_001214_050 Hb_001214_050 Hb_019040_030--Hb_001214_050 Hb_000191_080 Hb_000191_080 Hb_000156_210--Hb_000191_080 Hb_000156_210--Hb_005846_030 Hb_008698_010 Hb_008698_010 Hb_000156_210--Hb_008698_010 Hb_000156_210--Hb_002078_300 Hb_002078_300--Hb_005725_220 Hb_002078_300--Hb_000164_140 Hb_004109_160 Hb_004109_160 Hb_002078_300--Hb_004109_160 Hb_002078_300--Hb_005846_030 Hb_001792_030 Hb_001792_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.81479 4.52884 14.6706 18.8455 3.05133 3.86622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.604 27.9109 9.01589 8.89181 51.369

CAGE analysis