Hb_000191_080

Information

Type -
Description -
Location Contig191: 92177-92986
Sequence    

Annotation

kegg
ID rcu:RCOM_1045610
description hypothetical protein
nr
ID XP_012077024.1
description PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07471 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19032: 92855-93802 , PASA_asmbl_19033: 92325-93086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000191_080 0.0 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
2 Hb_000156_210 0.1329425319 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
3 Hb_003688_070 0.1468280977 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
4 Hb_007632_170 0.1540589352 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
5 Hb_019040_030 0.169488826 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
6 Hb_000162_120 0.1703415085 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
7 Hb_000500_050 0.1724063172 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
8 Hb_027298_010 0.1774176559 - - conserved hypothetical protein [Ricinus communis]
9 Hb_140627_010 0.1799260306 - - conserved hypothetical protein [Ricinus communis]
10 Hb_019762_050 0.1830126313 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
11 Hb_000140_270 0.1885358842 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
12 Hb_003181_060 0.1888720714 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
13 Hb_001712_020 0.1951500283 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
14 Hb_001898_180 0.195195203 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
15 Hb_001269_470 0.1967036297 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
16 Hb_001240_010 0.196959087 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
17 Hb_006153_060 0.1999598256 - - catalytic, putative [Ricinus communis]
18 Hb_021079_010 0.2014151293 - - PREDICTED: histone H2B-like [Populus euphratica]
19 Hb_005846_030 0.2014680318 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
20 Hb_003849_270 0.2050853703 - - -

Gene co-expression network

sample Hb_000191_080 Hb_000191_080 Hb_000156_210 Hb_000156_210 Hb_000191_080--Hb_000156_210 Hb_003688_070 Hb_003688_070 Hb_000191_080--Hb_003688_070 Hb_007632_170 Hb_007632_170 Hb_000191_080--Hb_007632_170 Hb_019040_030 Hb_019040_030 Hb_000191_080--Hb_019040_030 Hb_000162_120 Hb_000162_120 Hb_000191_080--Hb_000162_120 Hb_000500_050 Hb_000500_050 Hb_000191_080--Hb_000500_050 Hb_000156_210--Hb_007632_170 Hb_000156_210--Hb_019040_030 Hb_005846_030 Hb_005846_030 Hb_000156_210--Hb_005846_030 Hb_008698_010 Hb_008698_010 Hb_000156_210--Hb_008698_010 Hb_002078_300 Hb_002078_300 Hb_000156_210--Hb_002078_300 Hb_003688_070--Hb_000156_210 Hb_004108_110 Hb_004108_110 Hb_003688_070--Hb_004108_110 Hb_000140_270 Hb_000140_270 Hb_003688_070--Hb_000140_270 Hb_012022_170 Hb_012022_170 Hb_003688_070--Hb_012022_170 Hb_140627_010 Hb_140627_010 Hb_003688_070--Hb_140627_010 Hb_007632_170--Hb_005846_030 Hb_001898_180 Hb_001898_180 Hb_007632_170--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_007632_170--Hb_010577_040 Hb_007632_170--Hb_019040_030 Hb_007632_170--Hb_002078_300 Hb_000914_100 Hb_000914_100 Hb_019040_030--Hb_000914_100 Hb_019040_030--Hb_001898_180 Hb_000077_150 Hb_000077_150 Hb_019040_030--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_019040_030--Hb_001214_050 Hb_000627_260 Hb_000627_260 Hb_000162_120--Hb_000627_260 Hb_009767_130 Hb_009767_130 Hb_000162_120--Hb_009767_130 Hb_003813_020 Hb_003813_020 Hb_000162_120--Hb_003813_020 Hb_000162_120--Hb_001898_180 Hb_000162_120--Hb_019040_030 Hb_003124_110 Hb_003124_110 Hb_000500_050--Hb_003124_110 Hb_002783_150 Hb_002783_150 Hb_000500_050--Hb_002783_150 Hb_000032_400 Hb_000032_400 Hb_000500_050--Hb_000032_400 Hb_001373_130 Hb_001373_130 Hb_000500_050--Hb_001373_130 Hb_000500_050--Hb_000140_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.17089 16.4366 23.3954 26.4781 6.46536 8.90555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0767 104.451 11.1545 15.9029 96.7296

CAGE analysis