Hb_009767_130

Information

Type -
Description -
Location Contig9767: 104749-105255
Sequence    

Annotation

kegg
ID rcu:RCOM_0911980
description hypothetical protein
nr
ID XP_012069638.1
description PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
swissprot
ID O23342
description Preprotein translocase subunit SECE1 OS=Arabidopsis thaliana GN=SECE1 PE=1 SV=1
trembl
ID A0A067L6Q9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02178 PE=4 SV=1
Gene Ontology
ID GO:0005622
description preprotein translocase subunit sece1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009767_130 0.0 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
2 Hb_000327_110 0.0773767771 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
3 Hb_001449_070 0.0989170031 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000189_450 0.1076572938 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
5 Hb_003994_160 0.1105321776 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
6 Hb_000941_100 0.1109497279 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
7 Hb_007054_070 0.1115097927 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
8 Hb_174865_040 0.111514095 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
9 Hb_005276_010 0.113451922 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
10 Hb_000627_260 0.113775226 - - chloride channel clc, putative [Ricinus communis]
11 Hb_000368_090 0.1176918462 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
12 Hb_000300_660 0.1188132833 - - unknown [Glycine max]
13 Hb_000331_490 0.1194197305 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
14 Hb_008695_200 0.1194276187 - - Protein grpE, putative [Ricinus communis]
15 Hb_001946_160 0.1205238055 - - putative chaperon P13.9 [Castanea sativa]
16 Hb_002232_390 0.121472622 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
17 Hb_048093_010 0.1225106124 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
18 Hb_000371_100 0.1227804419 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
19 Hb_000172_440 0.1229934014 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
20 Hb_000164_140 0.1238767526 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009767_130 Hb_009767_130 Hb_000327_110 Hb_000327_110 Hb_009767_130--Hb_000327_110 Hb_001449_070 Hb_001449_070 Hb_009767_130--Hb_001449_070 Hb_000189_450 Hb_000189_450 Hb_009767_130--Hb_000189_450 Hb_003994_160 Hb_003994_160 Hb_009767_130--Hb_003994_160 Hb_000941_100 Hb_000941_100 Hb_009767_130--Hb_000941_100 Hb_007054_070 Hb_007054_070 Hb_009767_130--Hb_007054_070 Hb_174865_040 Hb_174865_040 Hb_000327_110--Hb_174865_040 Hb_000172_440 Hb_000172_440 Hb_000327_110--Hb_000172_440 Hb_000368_090 Hb_000368_090 Hb_000327_110--Hb_000368_090 Hb_000327_110--Hb_001449_070 Hb_015934_120 Hb_015934_120 Hb_000327_110--Hb_015934_120 Hb_000613_110 Hb_000613_110 Hb_001449_070--Hb_000613_110 Hb_001449_070--Hb_007054_070 Hb_001449_070--Hb_000189_450 Hb_002232_390 Hb_002232_390 Hb_001449_070--Hb_002232_390 Hb_000077_150 Hb_000077_150 Hb_001449_070--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_001449_070--Hb_001214_050 Hb_001677_220 Hb_001677_220 Hb_000189_450--Hb_001677_220 Hb_000816_200 Hb_000816_200 Hb_000189_450--Hb_000816_200 Hb_016219_030 Hb_016219_030 Hb_000189_450--Hb_016219_030 Hb_003142_010 Hb_003142_010 Hb_000189_450--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_000189_450--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_008695_200 Hb_008695_200 Hb_003994_160--Hb_008695_200 Hb_000086_080 Hb_000086_080 Hb_003994_160--Hb_000086_080 Hb_073973_090 Hb_073973_090 Hb_003994_160--Hb_073973_090 Hb_003053_110 Hb_003053_110 Hb_003994_160--Hb_003053_110 Hb_007192_030 Hb_007192_030 Hb_003994_160--Hb_007192_030 Hb_003994_160--Hb_000941_100 Hb_000941_100--Hb_003053_110 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000941_100--Hb_001195_770 Hb_012150_030 Hb_012150_030 Hb_000941_100--Hb_012150_030 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_002685_060 Hb_002685_060 Hb_007054_070--Hb_002685_060 Hb_016461_030 Hb_016461_030 Hb_007054_070--Hb_016461_030 Hb_007054_070--Hb_000189_450 Hb_005276_010 Hb_005276_010 Hb_007054_070--Hb_005276_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.4625 38.6069 77.3085 106.612 36.0468 69.0519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.0557 80.7053 37.9985 25.0345 213.768

CAGE analysis