Hb_007054_070

Information

Type -
Description -
Location Contig7054: 68654-73472
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35220g
description POPTRDRAFT_815507; monodehydroascorbate reductase family protein
nr
ID XP_012072402.1
description PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
swissprot
ID Q9LK94
description Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1
trembl
ID B9GI50
description Monodehydroascorbate reductase family protein OS=Populus trichocarpa GN=POPTR_0001s35220g PE=4 SV=1
Gene Ontology
ID GO:0005778
description probable monodehydroascorbate cytoplasmic isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55109: 68226-73450 , PASA_asmbl_55110: 72257-73033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007054_070 0.0 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
2 Hb_001449_070 0.0911632941 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002685_060 0.0923876405 - - 30S ribosomal protein S5, putative [Ricinus communis]
4 Hb_016461_030 0.1030052748 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000189_450 0.1082164851 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
6 Hb_005276_010 0.1115050966 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
7 Hb_009767_130 0.1115097927 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
8 Hb_000661_090 0.1116886564 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
9 Hb_011861_050 0.1120179068 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
10 Hb_002282_070 0.11375773 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
11 Hb_029920_030 0.1150426784 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
12 Hb_000816_200 0.1164749603 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
13 Hb_003475_020 0.1184536188 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
14 Hb_004631_090 0.1203997396 - - PREDICTED: probable glucan 1,3-beta-glucosidase A [Jatropha curcas]
15 Hb_000941_100 0.1220765512 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
16 Hb_158845_050 0.1241539556 - - PREDICTED: uncharacterized protein LOC105122890 [Populus euphratica]
17 Hb_003777_020 0.1244207805 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
18 Hb_000114_150 0.12519665 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
19 Hb_000480_040 0.1258532264 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
20 Hb_000331_490 0.1262817217 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007054_070 Hb_007054_070 Hb_001449_070 Hb_001449_070 Hb_007054_070--Hb_001449_070 Hb_002685_060 Hb_002685_060 Hb_007054_070--Hb_002685_060 Hb_016461_030 Hb_016461_030 Hb_007054_070--Hb_016461_030 Hb_000189_450 Hb_000189_450 Hb_007054_070--Hb_000189_450 Hb_005276_010 Hb_005276_010 Hb_007054_070--Hb_005276_010 Hb_009767_130 Hb_009767_130 Hb_007054_070--Hb_009767_130 Hb_000613_110 Hb_000613_110 Hb_001449_070--Hb_000613_110 Hb_001449_070--Hb_000189_450 Hb_002232_390 Hb_002232_390 Hb_001449_070--Hb_002232_390 Hb_000077_150 Hb_000077_150 Hb_001449_070--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_001449_070--Hb_001214_050 Hb_003777_020 Hb_003777_020 Hb_002685_060--Hb_003777_020 Hb_002282_070 Hb_002282_070 Hb_002685_060--Hb_002282_070 Hb_002685_060--Hb_016461_030 Hb_000661_090 Hb_000661_090 Hb_002685_060--Hb_000661_090 Hb_002685_060--Hb_005276_010 Hb_016461_030--Hb_002282_070 Hb_000816_200 Hb_000816_200 Hb_016461_030--Hb_000816_200 Hb_000345_370 Hb_000345_370 Hb_016461_030--Hb_000345_370 Hb_016461_030--Hb_003777_020 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_001427_040 Hb_001427_040 Hb_016461_030--Hb_001427_040 Hb_001677_220 Hb_001677_220 Hb_000189_450--Hb_001677_220 Hb_000189_450--Hb_000816_200 Hb_016219_030 Hb_016219_030 Hb_000189_450--Hb_016219_030 Hb_003142_010 Hb_003142_010 Hb_000189_450--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_000189_450--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_001946_160 Hb_001946_160 Hb_005276_010--Hb_001946_160 Hb_000941_100 Hb_000941_100 Hb_005276_010--Hb_000941_100 Hb_000164_140 Hb_000164_140 Hb_005276_010--Hb_000164_140 Hb_029920_030 Hb_029920_030 Hb_005276_010--Hb_029920_030 Hb_005276_010--Hb_016461_030 Hb_005276_010--Hb_000816_200 Hb_000327_110 Hb_000327_110 Hb_009767_130--Hb_000327_110 Hb_009767_130--Hb_001449_070 Hb_009767_130--Hb_000189_450 Hb_003994_160 Hb_003994_160 Hb_009767_130--Hb_003994_160 Hb_009767_130--Hb_000941_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50222 3.38707 7.29554 6.56165 1.7982 7.10148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.1543 4.10694 4.38465 3.63434 20.525

CAGE analysis