Hb_029920_030

Information

Type -
Description -
Location Contig29920: 36340-40497
Sequence    

Annotation

kegg
ID rcu:RCOM_0225410
description peroxiredoxins, prx-1, prx-2, prx-3, putative (EC:1.11.1.15)
nr
ID XP_012074345.1
description PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9C5R8
description 2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=3
trembl
ID A0A067KWB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08778 PE=4 SV=1
Gene Ontology
ID GO:0051920
description 2-cys peroxiredoxin chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31270: 36319-40643
cDNA
(Sanger)
(ID:Location)		 003_N02.ab1: 36649-40568 , 007_F13.ab1: 36830-40580 , 010_D06.ab1: 37360-40568 , 011_E22.ab1: 36824-40643 , 021_P18.ab1: 36873-40643 , 028_D01.ab1: 37381-40580 , 030_B12.ab1: 36667-40568 , 030_M17.ab1: 36875-40646 , 052_A04.ab1: 36824-40607

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029920_030 0.0 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
2 Hb_000816_200 0.0723009119 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
3 Hb_016461_030 0.084758236 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_001195_770 0.0859494936 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
5 Hb_005276_010 0.0868841388 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
6 Hb_000480_040 0.0912194138 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
7 Hb_000164_140 0.0957343945 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_000941_100 0.0966894829 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
9 Hb_001946_160 0.0994650354 - - putative chaperon P13.9 [Castanea sativa]
10 Hb_004644_030 0.1010506173 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
11 Hb_005725_220 0.1013008474 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
12 Hb_003124_120 0.1018385372 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
13 Hb_003581_290 0.1038110587 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
14 Hb_007534_050 0.1074901715 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000983_070 0.1077582233 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007441_310 0.1119509907 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
17 Hb_002685_060 0.112004214 - - 30S ribosomal protein S5, putative [Ricinus communis]
18 Hb_010128_020 0.11201199 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
19 Hb_004631_090 0.1120147862 - - PREDICTED: probable glucan 1,3-beta-glucosidase A [Jatropha curcas]
20 Hb_000032_500 0.1127053525 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_029920_030 Hb_029920_030 Hb_000816_200 Hb_000816_200 Hb_029920_030--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_029920_030--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_029920_030--Hb_001195_770 Hb_005276_010 Hb_005276_010 Hb_029920_030--Hb_005276_010 Hb_000480_040 Hb_000480_040 Hb_029920_030--Hb_000480_040 Hb_000164_140 Hb_000164_140 Hb_029920_030--Hb_000164_140 Hb_000816_200--Hb_016461_030 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310 Hb_002282_070 Hb_002282_070 Hb_016461_030--Hb_002282_070 Hb_000345_370 Hb_000345_370 Hb_016461_030--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_016461_030--Hb_003777_020 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_001427_040 Hb_001427_040 Hb_016461_030--Hb_001427_040 Hb_008705_020 Hb_008705_020 Hb_001195_770--Hb_008705_020 Hb_003053_110 Hb_003053_110 Hb_001195_770--Hb_003053_110 Hb_000941_100 Hb_000941_100 Hb_001195_770--Hb_000941_100 Hb_006907_060 Hb_006907_060 Hb_001195_770--Hb_006907_060 Hb_002762_110 Hb_002762_110 Hb_001195_770--Hb_002762_110 Hb_001946_160 Hb_001946_160 Hb_005276_010--Hb_001946_160 Hb_005276_010--Hb_000941_100 Hb_005276_010--Hb_000164_140 Hb_005276_010--Hb_016461_030 Hb_005276_010--Hb_000816_200 Hb_000309_020 Hb_000309_020 Hb_000480_040--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000480_040--Hb_011861_050 Hb_000085_070 Hb_000085_070 Hb_000480_040--Hb_000085_070 Hb_000480_040--Hb_000941_100 Hb_000480_040--Hb_001195_770 Hb_000108_020 Hb_000108_020 Hb_000480_040--Hb_000108_020 Hb_005725_220 Hb_005725_220 Hb_000164_140--Hb_005725_220 Hb_002078_300 Hb_002078_300 Hb_000164_140--Hb_002078_300 Hb_005846_030 Hb_005846_030 Hb_000164_140--Hb_005846_030 Hb_000028_110 Hb_000028_110 Hb_000164_140--Hb_000028_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2962 16.0513 75.5608 43.7675 16.4879 27.5193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.9275 32.3431 35.2538 34.7485 137.716

CAGE analysis