Hb_002078_300

Information

Type -
Description -
Location Contig2078: 219492-222847
Sequence    

Annotation

kegg
ID vvi:100248862
description uncharacterized LOC100248862
nr
ID XP_012085684.1
description PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JSF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17965 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21453: 219627-222871
cDNA
(Sanger)
(ID:Location)		 032_L03.ab1: 219627-222718

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_300 0.0 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
2 Hb_005725_220 0.0922637159 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
3 Hb_000164_140 0.0933352818 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_004109_160 0.1045283054 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
5 Hb_005846_030 0.1126574975 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
6 Hb_001792_030 0.1132936857 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
7 Hb_003941_030 0.1148558681 - - Protease ecfE, putative [Ricinus communis]
8 Hb_000189_520 0.1151287108 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
9 Hb_001621_060 0.1161605569 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
10 Hb_007632_170 0.1227730969 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
11 Hb_010577_040 0.1245726091 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
12 Hb_005489_090 0.1271156239 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
13 Hb_000723_290 0.1293703851 - - calcium lipid binding protein, putative [Ricinus communis]
14 Hb_003935_080 0.1303367531 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
15 Hb_020378_060 0.1303876445 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
16 Hb_000983_070 0.1304926233 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002534_030 0.1341570172 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_001898_180 0.1351408791 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
19 Hb_000684_280 0.1356733692 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
20 Hb_114861_010 0.1360933479 - - STRESS ENHANCED protein 1 [Populus trichocarpa]

Gene co-expression network

sample Hb_002078_300 Hb_002078_300 Hb_005725_220 Hb_005725_220 Hb_002078_300--Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_002078_300--Hb_000164_140 Hb_004109_160 Hb_004109_160 Hb_002078_300--Hb_004109_160 Hb_005846_030 Hb_005846_030 Hb_002078_300--Hb_005846_030 Hb_001792_030 Hb_001792_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030 Hb_005725_220--Hb_000164_140 Hb_001124_180 Hb_001124_180 Hb_005725_220--Hb_001124_180 Hb_005725_220--Hb_005846_030 Hb_005489_090 Hb_005489_090 Hb_005725_220--Hb_005489_090 Hb_029920_030 Hb_029920_030 Hb_005725_220--Hb_029920_030 Hb_005276_010 Hb_005276_010 Hb_000164_140--Hb_005276_010 Hb_000164_140--Hb_005846_030 Hb_000164_140--Hb_029920_030 Hb_000028_110 Hb_000028_110 Hb_000164_140--Hb_000028_110 Hb_000723_290 Hb_000723_290 Hb_004109_160--Hb_000723_290 Hb_000473_060 Hb_000473_060 Hb_004109_160--Hb_000473_060 Hb_001621_060 Hb_001621_060 Hb_004109_160--Hb_001621_060 Hb_010577_040 Hb_010577_040 Hb_004109_160--Hb_010577_040 Hb_000254_140 Hb_000254_140 Hb_004109_160--Hb_000254_140 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_000189_520 Hb_000189_520 Hb_001792_030--Hb_000189_520 Hb_001792_030--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_001792_030--Hb_003935_080 Hb_001792_030--Hb_005489_090 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_000594_100 Hb_000594_100 Hb_001792_030--Hb_000594_100 Hb_000684_280 Hb_000684_280 Hb_003941_030--Hb_000684_280 Hb_000318_130 Hb_000318_130 Hb_003941_030--Hb_000318_130 Hb_000032_400 Hb_000032_400 Hb_003941_030--Hb_000032_400 Hb_000661_090 Hb_000661_090 Hb_003941_030--Hb_000661_090 Hb_004375_050 Hb_004375_050 Hb_003941_030--Hb_004375_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.93935 3.2751 12.2015 11.8676 3.86102 4.08622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.94601 13.6396 10.0778 3.67724 47.3668

CAGE analysis