Hb_000032_400

Information

Type -
Description -
Location Contig32: 306194-310317
Sequence    

Annotation

kegg
ID tcc:TCM_016477
description UDP-D-glucose/UDP-D-galactose 4-epimerase 5 isoform 1
nr
ID XP_012086709.1
description PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
swissprot
ID O65781
description UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1
trembl
ID A0A067JR64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20444 PE=3 SV=1
Gene Ontology
ID GO:0003978
description udp-glucose 4-epimerase gepi48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33737: 306191-310234
cDNA
(Sanger)
(ID:Location)		 013_K17.ab1: 306191-307914 , 038_K23.ab1: 306191-307936

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_400 0.0 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
2 Hb_011053_030 0.0897750365 - - -
3 Hb_000189_520 0.1004562375 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
4 Hb_003941_030 0.1054745363 - - Protease ecfE, putative [Ricinus communis]
5 Hb_026314_030 0.115092357 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
6 Hb_000684_280 0.1264786639 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
7 Hb_000175_050 0.1269171586 - - -
8 Hb_007904_040 0.1276103972 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
9 Hb_020378_060 0.1312743564 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_005305_020 0.1348372259 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
11 Hb_000834_080 0.1370224152 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
12 Hb_004672_020 0.1399117004 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
13 Hb_001343_020 0.1410961338 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000866_050 0.1426987809 - - phosphate transporter [Manihot esculenta]
15 Hb_003494_130 0.1429659935 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
16 Hb_002078_300 0.1443090103 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
17 Hb_000983_070 0.1475864679 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000495_080 0.1484811012 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
19 Hb_003124_110 0.1487204316 - - hypothetical protein VITISV_026680 [Vitis vinifera]
20 Hb_000114_150 0.1504302141 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000032_400 Hb_000032_400 Hb_011053_030 Hb_011053_030 Hb_000032_400--Hb_011053_030 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_000032_400--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000175_050 Hb_000175_050 Hb_000032_400--Hb_000175_050 Hb_000834_080 Hb_000834_080 Hb_011053_030--Hb_000834_080 Hb_011053_030--Hb_000175_050 Hb_011053_030--Hb_026314_030 Hb_000866_050 Hb_000866_050 Hb_011053_030--Hb_000866_050 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010 Hb_001792_030 Hb_001792_030 Hb_000189_520--Hb_001792_030 Hb_000189_520--Hb_000866_050 Hb_001621_060 Hb_001621_060 Hb_000189_520--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_000189_520--Hb_003935_080 Hb_000189_520--Hb_011053_030 Hb_003941_030--Hb_000684_280 Hb_000318_130 Hb_000318_130 Hb_003941_030--Hb_000318_130 Hb_000661_090 Hb_000661_090 Hb_003941_030--Hb_000661_090 Hb_002078_300 Hb_002078_300 Hb_003941_030--Hb_002078_300 Hb_004375_050 Hb_004375_050 Hb_003941_030--Hb_004375_050 Hb_026314_030--Hb_000866_050 Hb_026314_030--Hb_000834_080 Hb_183963_010 Hb_183963_010 Hb_026314_030--Hb_183963_010 Hb_005305_020 Hb_005305_020 Hb_026314_030--Hb_005305_020 Hb_000684_280--Hb_000661_090 Hb_036790_120 Hb_036790_120 Hb_000684_280--Hb_036790_120 Hb_000537_070 Hb_000537_070 Hb_000684_280--Hb_000537_070 Hb_000684_280--Hb_011053_030 Hb_000189_250 Hb_000189_250 Hb_000684_280--Hb_000189_250 Hb_007904_040 Hb_007904_040 Hb_000175_050--Hb_007904_040 Hb_000152_480 Hb_000152_480 Hb_000175_050--Hb_000152_480 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_005489_090 Hb_005489_090 Hb_000175_050--Hb_005489_090 Hb_000032_140 Hb_000032_140 Hb_000175_050--Hb_000032_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46268 7.94678 10.3719 10.6082 1.42447 2.0826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.67326 7.42333 5.64415 3.39172 39.3446

CAGE analysis