Hb_001792_030

Information

Type -
Description -
Location Contig1792: 81968-85981
Sequence    

Annotation

kegg
ID rcu:RCOM_0364900
description methionyl-tRNA synthetase, putative
nr
ID XP_012081875.1
description PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
swissprot
ID Q9ZTS1
description Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2
trembl
ID A0A067JZX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19239 PE=4 SV=1
Gene Ontology
ID GO:0009507
description aminoacyl trna synthase complex-interacting multifunctional protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17330: 81975-86083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001792_030 0.0 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
2 Hb_000189_520 0.0771550119 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
3 Hb_001621_060 0.0884310923 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
4 Hb_003935_080 0.0964315593 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
5 Hb_005489_090 0.0994458925 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
6 Hb_000058_080 0.1049460446 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_000594_100 0.1065281368 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
8 Hb_036790_120 0.1097426216 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
9 Hb_010577_040 0.1115182742 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
10 Hb_005725_220 0.1128536859 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
11 Hb_002078_300 0.1132936857 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
12 Hb_000866_050 0.1149137147 - - phosphate transporter [Manihot esculenta]
13 Hb_010128_020 0.1153487191 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
14 Hb_001484_080 0.1157686939 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
15 Hb_114861_010 0.1160560705 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
16 Hb_000983_070 0.1186895655 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001373_130 0.1297144474 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008698_010 0.1304310658 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_001124_180 0.1306799528 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
20 Hb_007044_250 0.1313049819 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001792_030 Hb_001792_030 Hb_000189_520 Hb_000189_520 Hb_001792_030--Hb_000189_520 Hb_001621_060 Hb_001621_060 Hb_001792_030--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_001792_030--Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_001792_030--Hb_005489_090 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_000594_100 Hb_000594_100 Hb_001792_030--Hb_000594_100 Hb_000866_050 Hb_000866_050 Hb_000189_520--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_000189_520--Hb_001621_060 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030 Hb_010577_040 Hb_010577_040 Hb_001621_060--Hb_010577_040 Hb_004109_160 Hb_004109_160 Hb_001621_060--Hb_004109_160 Hb_008698_010 Hb_008698_010 Hb_001621_060--Hb_008698_010 Hb_001621_060--Hb_003935_080 Hb_003935_080--Hb_005489_090 Hb_003935_080--Hb_000594_100 Hb_003935_080--Hb_010577_040 Hb_001124_180 Hb_001124_180 Hb_003935_080--Hb_001124_180 Hb_003935_080--Hb_000866_050 Hb_005489_090--Hb_001124_180 Hb_005489_090--Hb_000594_100 Hb_005489_090--Hb_010577_040 Hb_005725_220 Hb_005725_220 Hb_005489_090--Hb_005725_220 Hb_000058_080--Hb_000866_050 Hb_158144_020 Hb_158144_020 Hb_000058_080--Hb_158144_020 Hb_003581_290 Hb_003581_290 Hb_000058_080--Hb_003581_290 Hb_000058_080--Hb_000594_100 Hb_003124_120 Hb_003124_120 Hb_000058_080--Hb_003124_120 Hb_001373_130 Hb_001373_130 Hb_000594_100--Hb_001373_130 Hb_000594_100--Hb_001124_180 Hb_000594_100--Hb_010577_040 Hb_000983_070 Hb_000983_070 Hb_000594_100--Hb_000983_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43498 1.65738 11.0461 6.5133 1.544 2.41139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.4917 8.07003 5.81901 5.64306 35.1776

CAGE analysis