Hb_004109_160

Information

Type -
Description -
Location Contig4109: 123484-126278
Sequence    

Annotation

kegg
ID cit:102620912
description peptide methionine sulfoxide reductase B1, chloroplastic-like
nr
ID XP_012087688.1
description PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
swissprot
ID Q9C8M2
description Peptide methionine sulfoxide reductase B1, chloroplastic OS=Arabidopsis thaliana GN=MSRB1 PE=1 SV=1
trembl
ID A0A067JL74
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25702 PE=4 SV=1
Gene Ontology
ID GO:0009570
description peptide methionine sulfoxide reductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40643: 123477-126334 , PASA_asmbl_40644: 124275-124531
cDNA
(Sanger)
(ID:Location)		 051_N15.ab1: 123642-126332

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_160 0.0 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
2 Hb_000723_290 0.0861993685 - - calcium lipid binding protein, putative [Ricinus communis]
3 Hb_000473_060 0.0989579544 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
4 Hb_002078_300 0.1045283054 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
5 Hb_001621_060 0.1059572087 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
6 Hb_010577_040 0.1068778757 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
7 Hb_000254_140 0.116167106 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
8 Hb_007632_170 0.1227762193 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
9 Hb_020378_060 0.1328626712 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_003935_080 0.1352115715 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
11 Hb_000164_140 0.1397729358 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
12 Hb_005725_220 0.1401500273 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
13 Hb_001792_030 0.1405070494 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
14 Hb_005846_030 0.141264043 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
15 Hb_001124_180 0.1445402203 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
16 Hb_001898_180 0.1460192306 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
17 Hb_005489_090 0.1481297124 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
18 Hb_001294_030 0.1481388211 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
19 Hb_000042_290 0.1515957448 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
20 Hb_000189_520 0.1527005159 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_160 Hb_004109_160 Hb_000723_290 Hb_000723_290 Hb_004109_160--Hb_000723_290 Hb_000473_060 Hb_000473_060 Hb_004109_160--Hb_000473_060 Hb_002078_300 Hb_002078_300 Hb_004109_160--Hb_002078_300 Hb_001621_060 Hb_001621_060 Hb_004109_160--Hb_001621_060 Hb_010577_040 Hb_010577_040 Hb_004109_160--Hb_010577_040 Hb_000254_140 Hb_000254_140 Hb_004109_160--Hb_000254_140 Hb_000723_290--Hb_010577_040 Hb_000167_050 Hb_000167_050 Hb_000723_290--Hb_000167_050 Hb_000365_370 Hb_000365_370 Hb_000723_290--Hb_000365_370 Hb_001124_180 Hb_001124_180 Hb_000723_290--Hb_001124_180 Hb_000176_010 Hb_000176_010 Hb_000723_290--Hb_000176_010 Hb_000473_060--Hb_001621_060 Hb_011053_020 Hb_011053_020 Hb_000473_060--Hb_011053_020 Hb_001369_700 Hb_001369_700 Hb_000473_060--Hb_001369_700 Hb_000189_520 Hb_000189_520 Hb_000473_060--Hb_000189_520 Hb_000473_060--Hb_002078_300 Hb_005725_220 Hb_005725_220 Hb_002078_300--Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_002078_300--Hb_000164_140 Hb_005846_030 Hb_005846_030 Hb_002078_300--Hb_005846_030 Hb_001792_030 Hb_001792_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030 Hb_001621_060--Hb_001792_030 Hb_001621_060--Hb_010577_040 Hb_001621_060--Hb_000189_520 Hb_008698_010 Hb_008698_010 Hb_001621_060--Hb_008698_010 Hb_003935_080 Hb_003935_080 Hb_001621_060--Hb_003935_080 Hb_010577_040--Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_010577_040--Hb_005489_090 Hb_000594_100 Hb_000594_100 Hb_010577_040--Hb_000594_100 Hb_020378_060 Hb_020378_060 Hb_010577_040--Hb_020378_060 Hb_001790_030 Hb_001790_030 Hb_000254_140--Hb_001790_030 Hb_000984_240 Hb_000984_240 Hb_000254_140--Hb_000984_240 Hb_000254_140--Hb_000723_290 Hb_007632_170 Hb_007632_170 Hb_000254_140--Hb_007632_170 Hb_000254_140--Hb_020378_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0171 6.18692 47.5359 79.7774 9.59271 24.0819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.566 67.1382 32.7949 18.8845 201.318

CAGE analysis