Hb_020378_060

Information

Type -
Description -
Location Contig20378: 46220-48719
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023083mg
description hypothetical protein
nr
ID XP_012065635.1
description PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
swissprot
ID O60344
description Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4
trembl
ID M5XSW7
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023083mg PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase-like protein 13 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20872: 47238-47491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020378_060 0.0 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
2 Hb_001898_180 0.0932837778 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
3 Hb_010577_040 0.1015005511 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
4 Hb_000388_060 0.1072519153 - - fructokinase [Manihot esculenta]
5 Hb_000983_070 0.1119924451 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000622_290 0.114915822 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
7 Hb_005489_090 0.1161149005 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
8 Hb_003935_080 0.1192820338 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
9 Hb_000723_290 0.1206424678 - - calcium lipid binding protein, putative [Ricinus communis]
10 Hb_001789_200 0.1230901647 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
11 Hb_002053_010 0.1243290757 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
12 Hb_005305_020 0.1253507293 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
13 Hb_001946_380 0.1264600973 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
14 Hb_001124_180 0.1278919183 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
15 Hb_001629_090 0.1280921607 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007632_170 0.1298856114 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
17 Hb_002078_300 0.1303876445 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
18 Hb_001621_060 0.130922613 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
19 Hb_000599_210 0.1312636596 - - serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_000032_400 0.1312743564 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]

Gene co-expression network

sample Hb_020378_060 Hb_020378_060 Hb_001898_180 Hb_001898_180 Hb_020378_060--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_020378_060--Hb_010577_040 Hb_000388_060 Hb_000388_060 Hb_020378_060--Hb_000388_060 Hb_000983_070 Hb_000983_070 Hb_020378_060--Hb_000983_070 Hb_000622_290 Hb_000622_290 Hb_020378_060--Hb_000622_290 Hb_005489_090 Hb_005489_090 Hb_020378_060--Hb_005489_090 Hb_001898_180--Hb_000983_070 Hb_002053_010 Hb_002053_010 Hb_001898_180--Hb_002053_010 Hb_000189_450 Hb_000189_450 Hb_001898_180--Hb_000189_450 Hb_007632_170 Hb_007632_170 Hb_001898_180--Hb_007632_170 Hb_001898_180--Hb_000622_290 Hb_003935_080 Hb_003935_080 Hb_010577_040--Hb_003935_080 Hb_000723_290 Hb_000723_290 Hb_010577_040--Hb_000723_290 Hb_010577_040--Hb_005489_090 Hb_001621_060 Hb_001621_060 Hb_010577_040--Hb_001621_060 Hb_000594_100 Hb_000594_100 Hb_010577_040--Hb_000594_100 Hb_001789_200 Hb_001789_200 Hb_000388_060--Hb_001789_200 Hb_000388_060--Hb_002053_010 Hb_008147_080 Hb_008147_080 Hb_000388_060--Hb_008147_080 Hb_000388_060--Hb_000983_070 Hb_001124_180 Hb_001124_180 Hb_000388_060--Hb_001124_180 Hb_000388_060--Hb_001898_180 Hb_010128_020 Hb_010128_020 Hb_000983_070--Hb_010128_020 Hb_000816_200 Hb_000816_200 Hb_000983_070--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000983_070--Hb_003124_120 Hb_001629_090 Hb_001629_090 Hb_000983_070--Hb_001629_090 Hb_000983_070--Hb_002053_010 Hb_002762_110 Hb_002762_110 Hb_000622_290--Hb_002762_110 Hb_007192_030 Hb_007192_030 Hb_000622_290--Hb_007192_030 Hb_004644_030 Hb_004644_030 Hb_000622_290--Hb_004644_030 Hb_001946_380 Hb_001946_380 Hb_000622_290--Hb_001946_380 Hb_000107_430 Hb_000107_430 Hb_000622_290--Hb_000107_430 Hb_001369_790 Hb_001369_790 Hb_000622_290--Hb_001369_790 Hb_005489_090--Hb_001124_180 Hb_005489_090--Hb_003935_080 Hb_005489_090--Hb_000594_100 Hb_005725_220 Hb_005725_220 Hb_005489_090--Hb_005725_220 Hb_001792_030 Hb_001792_030 Hb_005489_090--Hb_001792_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18981 5.08186 10.4818 14.4882 1.76183 3.28858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.50754 11.1166 8.72199 5.25579 30.3496

CAGE analysis