Hb_001898_180

Information

Type -
Description -
Location Contig1898: 148616-149050
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00640g
description POPTRDRAFT_809069; hypothetical protein
nr
ID XP_012066685.1
description PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
swissprot
ID Q94KR9
description Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum GN=infA PE=2 SV=1
trembl
ID A0A067LED1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00251 PE=3 SV=1
Gene Ontology
ID GO:0009507
description translational initiation factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18839: 144141-147619 , PASA_asmbl_18840: 148488-149169
cDNA
(Sanger)
(ID:Location)		 005_L14.ab1: 148488-149167 , 012_N14.ab1: 148488-149167 , 018_F03.ab1: 148488-149169 , 019_O04.ab1: 148488-149119 , 026_F21.ab1: 148488-149169 , 028_D04.ab1: 148488-149117 , 048_B05.ab1: 148488-149117

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_180 0.0 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
2 Hb_000983_070 0.0797493212 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002053_010 0.0924038739 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
4 Hb_020378_060 0.0932837778 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
5 Hb_000189_450 0.0965473728 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
6 Hb_007632_170 0.0975538844 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
7 Hb_000622_290 0.0981138537 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
8 Hb_016219_030 0.1014170224 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000388_060 0.1027548928 - - fructokinase [Manihot esculenta]
10 Hb_001629_090 0.1030220576 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001214_050 0.1036336862 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
12 Hb_001789_200 0.1038495899 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
13 Hb_008695_200 0.1039784625 - - Protein grpE, putative [Ricinus communis]
14 Hb_019040_030 0.1048510795 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
15 Hb_002762_110 0.105346835 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004644_030 0.1073989964 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
17 Hb_000114_150 0.1111679913 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
18 Hb_000816_200 0.1124195008 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
19 Hb_000077_150 0.1128971108 - - PREDICTED: riboflavin synthase [Jatropha curcas]
20 Hb_000914_100 0.1155638779 - - unknown [Glycine max]

Gene co-expression network

sample Hb_001898_180 Hb_001898_180 Hb_000983_070 Hb_000983_070 Hb_001898_180--Hb_000983_070 Hb_002053_010 Hb_002053_010 Hb_001898_180--Hb_002053_010 Hb_020378_060 Hb_020378_060 Hb_001898_180--Hb_020378_060 Hb_000189_450 Hb_000189_450 Hb_001898_180--Hb_000189_450 Hb_007632_170 Hb_007632_170 Hb_001898_180--Hb_007632_170 Hb_000622_290 Hb_000622_290 Hb_001898_180--Hb_000622_290 Hb_010128_020 Hb_010128_020 Hb_000983_070--Hb_010128_020 Hb_000816_200 Hb_000816_200 Hb_000983_070--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000983_070--Hb_003124_120 Hb_001629_090 Hb_001629_090 Hb_000983_070--Hb_001629_090 Hb_000983_070--Hb_002053_010 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_001369_790 Hb_001369_790 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080 Hb_010577_040 Hb_010577_040 Hb_020378_060--Hb_010577_040 Hb_000388_060 Hb_000388_060 Hb_020378_060--Hb_000388_060 Hb_020378_060--Hb_000983_070 Hb_020378_060--Hb_000622_290 Hb_005489_090 Hb_005489_090 Hb_020378_060--Hb_005489_090 Hb_001677_220 Hb_001677_220 Hb_000189_450--Hb_001677_220 Hb_000189_450--Hb_000816_200 Hb_000189_450--Hb_016219_030 Hb_003142_010 Hb_003142_010 Hb_000189_450--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_000189_450--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_005846_030 Hb_005846_030 Hb_007632_170--Hb_005846_030 Hb_007632_170--Hb_010577_040 Hb_019040_030 Hb_019040_030 Hb_007632_170--Hb_019040_030 Hb_000156_210 Hb_000156_210 Hb_007632_170--Hb_000156_210 Hb_002078_300 Hb_002078_300 Hb_007632_170--Hb_002078_300 Hb_002762_110 Hb_002762_110 Hb_000622_290--Hb_002762_110 Hb_007192_030 Hb_007192_030 Hb_000622_290--Hb_007192_030 Hb_004644_030 Hb_004644_030 Hb_000622_290--Hb_004644_030 Hb_001946_380 Hb_001946_380 Hb_000622_290--Hb_001946_380 Hb_000107_430 Hb_000107_430 Hb_000622_290--Hb_000107_430 Hb_000622_290--Hb_001369_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.20986 13.9815 26.1869 29.9941 5.71336 11.2256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6995 32.2748 13.3947 17.3138 75.1515

CAGE analysis