Hb_000156_210

Information

Type -
Description -
Location Contig156: 180088-188432
Sequence    

Annotation

kegg
ID rcu:RCOM_0470840
description metal transporter, putative
nr
ID XP_012067502.1
description PREDICTED: metal transporter Nramp1 [Jatropha curcas]
swissprot
ID Q9SAH8
description Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=1 SV=1
trembl
ID A0A067L0L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26995 PE=3 SV=1
Gene Ontology
ID GO:0016020
description metal transporter nramp6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13548: 180120-229939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_210 0.0 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
2 Hb_007632_170 0.1193303616 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
3 Hb_019040_030 0.1227033827 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
4 Hb_000191_080 0.1329425319 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
5 Hb_005846_030 0.1518071515 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
6 Hb_008698_010 0.1656369518 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_002078_300 0.167234628 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
8 Hb_140627_010 0.1712162148 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003688_070 0.171841585 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
10 Hb_001712_020 0.1723597423 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
11 Hb_000622_240 0.1735868552 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
12 Hb_001240_010 0.1740502018 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
13 Hb_067069_010 0.174075756 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
14 Hb_042202_050 0.1744142282 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
15 Hb_001621_060 0.176532032 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
16 Hb_001898_180 0.1776859241 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
17 Hb_000140_270 0.1777587315 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
18 Hb_001490_030 0.1831821902 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
19 Hb_004109_160 0.1837726407 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
20 Hb_000164_140 0.1837887855 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000156_210 Hb_000156_210 Hb_007632_170 Hb_007632_170 Hb_000156_210--Hb_007632_170 Hb_019040_030 Hb_019040_030 Hb_000156_210--Hb_019040_030 Hb_000191_080 Hb_000191_080 Hb_000156_210--Hb_000191_080 Hb_005846_030 Hb_005846_030 Hb_000156_210--Hb_005846_030 Hb_008698_010 Hb_008698_010 Hb_000156_210--Hb_008698_010 Hb_002078_300 Hb_002078_300 Hb_000156_210--Hb_002078_300 Hb_007632_170--Hb_005846_030 Hb_001898_180 Hb_001898_180 Hb_007632_170--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_007632_170--Hb_010577_040 Hb_007632_170--Hb_019040_030 Hb_007632_170--Hb_002078_300 Hb_000914_100 Hb_000914_100 Hb_019040_030--Hb_000914_100 Hb_019040_030--Hb_001898_180 Hb_000077_150 Hb_000077_150 Hb_019040_030--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_019040_030--Hb_001214_050 Hb_003688_070 Hb_003688_070 Hb_000191_080--Hb_003688_070 Hb_000191_080--Hb_007632_170 Hb_000191_080--Hb_019040_030 Hb_000162_120 Hb_000162_120 Hb_000191_080--Hb_000162_120 Hb_000500_050 Hb_000500_050 Hb_000191_080--Hb_000500_050 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000164_140 Hb_000164_140 Hb_005846_030--Hb_000164_140 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_001621_060 Hb_001621_060 Hb_008698_010--Hb_001621_060 Hb_000460_070 Hb_000460_070 Hb_008698_010--Hb_000460_070 Hb_002534_030 Hb_002534_030 Hb_008698_010--Hb_002534_030 Hb_001792_030 Hb_001792_030 Hb_008698_010--Hb_001792_030 Hb_001229_020 Hb_001229_020 Hb_008698_010--Hb_001229_020 Hb_008698_010--Hb_002078_300 Hb_002078_300--Hb_005725_220 Hb_002078_300--Hb_000164_140 Hb_004109_160 Hb_004109_160 Hb_002078_300--Hb_004109_160 Hb_002078_300--Hb_005846_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12647 2.03024 5.23675 6.37382 3.21265 2.92377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4757 22.4783 5.87411 5.67338 35.1168

CAGE analysis