Hb_003688_070

Information

Type -
Description -
Location Contig3688: 47585-53118
Sequence    

Annotation

kegg
ID rcu:RCOM_1469850
description mitochondrial carrier protein, putative
nr
ID XP_012080376.1
description PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
swissprot
ID Q55E45
description Mitochondrial substrate carrier family protein E OS=Dictyostelium discoideum GN=mcfE PE=3 SV=1
trembl
ID A0A067KHM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11720 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial substrate carrier family protein e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37968: 48777-53177
cDNA
(Sanger)
(ID:Location)		 029_K18.ab1: 52248-53161

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_070 0.0 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
2 Hb_000191_080 0.1468280977 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
3 Hb_000156_210 0.171841585 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
4 Hb_004108_110 0.1809014828 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000140_270 0.198206446 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
6 Hb_012022_170 0.2009564387 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
7 Hb_140627_010 0.2172807504 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007741_100 0.2179254994 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
9 Hb_012022_140 0.2187839146 - - ADP,ATP carrier protein, putative [Ricinus communis]
10 Hb_019762_050 0.2190962541 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
11 Hb_006738_020 0.22612301 - - hypothetical protein VITISV_010510 [Vitis vinifera]
12 Hb_001240_010 0.2269291353 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
13 Hb_002232_060 0.2292777046 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
14 Hb_003849_270 0.2305209688 - - -
15 Hb_100886_010 0.2308786603 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_027298_010 0.2320308096 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003638_070 0.2327913451 - - hypothetical protein EUGRSUZ_E00638 [Eucalyptus grandis]
18 Hb_019040_030 0.233858017 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
19 Hb_000072_200 0.2351762103 - - PREDICTED: myb-like protein X [Jatropha curcas]
20 Hb_000500_050 0.2368274787 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]

Gene co-expression network

sample Hb_003688_070 Hb_003688_070 Hb_000191_080 Hb_000191_080 Hb_003688_070--Hb_000191_080 Hb_000156_210 Hb_000156_210 Hb_003688_070--Hb_000156_210 Hb_004108_110 Hb_004108_110 Hb_003688_070--Hb_004108_110 Hb_000140_270 Hb_000140_270 Hb_003688_070--Hb_000140_270 Hb_012022_170 Hb_012022_170 Hb_003688_070--Hb_012022_170 Hb_140627_010 Hb_140627_010 Hb_003688_070--Hb_140627_010 Hb_000191_080--Hb_000156_210 Hb_007632_170 Hb_007632_170 Hb_000191_080--Hb_007632_170 Hb_019040_030 Hb_019040_030 Hb_000191_080--Hb_019040_030 Hb_000162_120 Hb_000162_120 Hb_000191_080--Hb_000162_120 Hb_000500_050 Hb_000500_050 Hb_000191_080--Hb_000500_050 Hb_000156_210--Hb_007632_170 Hb_000156_210--Hb_019040_030 Hb_005846_030 Hb_005846_030 Hb_000156_210--Hb_005846_030 Hb_008698_010 Hb_008698_010 Hb_000156_210--Hb_008698_010 Hb_002078_300 Hb_002078_300 Hb_000156_210--Hb_002078_300 Hb_019762_050 Hb_019762_050 Hb_004108_110--Hb_019762_050 Hb_001766_030 Hb_001766_030 Hb_004108_110--Hb_001766_030 Hb_004089_020 Hb_004089_020 Hb_004108_110--Hb_004089_020 Hb_007741_100 Hb_007741_100 Hb_004108_110--Hb_007741_100 Hb_012022_140 Hb_012022_140 Hb_004108_110--Hb_012022_140 Hb_001097_090 Hb_001097_090 Hb_004108_110--Hb_001097_090 Hb_000140_270--Hb_140627_010 Hb_000140_270--Hb_012022_170 Hb_000140_270--Hb_007741_100 Hb_027298_010 Hb_027298_010 Hb_000140_270--Hb_027298_010 Hb_000140_270--Hb_019762_050 Hb_000457_290 Hb_000457_290 Hb_000140_270--Hb_000457_290 Hb_012022_170--Hb_140627_010 Hb_000035_480 Hb_000035_480 Hb_012022_170--Hb_000035_480 Hb_001240_010 Hb_001240_010 Hb_012022_170--Hb_001240_010 Hb_003020_260 Hb_003020_260 Hb_012022_170--Hb_003020_260 Hb_100886_010 Hb_100886_010 Hb_012022_170--Hb_100886_010 Hb_140627_010--Hb_000035_480 Hb_000403_070 Hb_000403_070 Hb_140627_010--Hb_000403_070 Hb_140627_010--Hb_000457_290 Hb_140627_010--Hb_001240_010 Hb_006846_150 Hb_006846_150 Hb_140627_010--Hb_006846_150 Hb_000392_550 Hb_000392_550 Hb_140627_010--Hb_000392_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.66385 2.42876 2.89222 3.76434 2.15012 2.20834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.77428 31.6792 5.57906 4.88651 22.8986

CAGE analysis