Hb_004089_020

Information

Type -
Description -
Location Contig4089: 31008-37462
Sequence    

Annotation

kegg
ID rcu:RCOM_0008410
description 3-phosphoinositide-dependent protein kinase-1, putative (EC:2.7.11.13)
nr
ID XP_012090189.1
description PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
swissprot
ID Q4V3C8
description 3-phosphoinositide-dependent protein kinase 2 OS=Arabidopsis thaliana GN=PDPK2 PE=1 SV=1
trembl
ID B9T6S2
description 3-phosphoinositide-dependent protein kinase-1, putative OS=Ricinus communis GN=RCOM_0008410 PE=4 SV=1
Gene Ontology
ID GO:0004697
description 3-phosphoinositide-dependent protein kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40386: 31052-37512 , PASA_asmbl_40387: 31125-37483 , PASA_asmbl_40388: 31125-36998 , PASA_asmbl_40389: 31757-32028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004089_020 0.0 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
2 Hb_012022_140 0.121417402 - - ADP,ATP carrier protein, putative [Ricinus communis]
3 Hb_000815_290 0.1249596888 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
4 Hb_000739_140 0.1256444263 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
5 Hb_005054_260 0.134866069 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
6 Hb_170426_010 0.1374627411 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
7 Hb_000005_300 0.1446789593 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000771_060 0.147353832 - - PREDICTED: spermine synthase [Jatropha curcas]
9 Hb_001979_020 0.15020122 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
10 Hb_001252_220 0.1513880136 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
11 Hb_000676_310 0.1537874537 - - BnaC09g40680D [Brassica napus]
12 Hb_000189_540 0.1556752004 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
13 Hb_000008_400 0.1561540323 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
14 Hb_003020_150 0.1564604922 - - tropinone reductase, putative [Ricinus communis]
15 Hb_009075_010 0.1566510089 - - 60S ribosomal protein L10B [Hevea brasiliensis]
16 Hb_001718_030 0.1598181746 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
17 Hb_002060_010 0.1607347359 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
18 Hb_004108_110 0.1611674114 - - conserved hypothetical protein [Ricinus communis]
19 Hb_098315_020 0.162609047 - - hypothetical protein M569_15712 [Genlisea aurea]
20 Hb_002260_010 0.1636057303 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]

Gene co-expression network

sample Hb_004089_020 Hb_004089_020 Hb_012022_140 Hb_012022_140 Hb_004089_020--Hb_012022_140 Hb_000815_290 Hb_000815_290 Hb_004089_020--Hb_000815_290 Hb_000739_140 Hb_000739_140 Hb_004089_020--Hb_000739_140 Hb_005054_260 Hb_005054_260 Hb_004089_020--Hb_005054_260 Hb_170426_010 Hb_170426_010 Hb_004089_020--Hb_170426_010 Hb_000005_300 Hb_000005_300 Hb_004089_020--Hb_000005_300 Hb_001252_220 Hb_001252_220 Hb_012022_140--Hb_001252_220 Hb_012022_140--Hb_000005_300 Hb_001373_060 Hb_001373_060 Hb_012022_140--Hb_001373_060 Hb_002232_060 Hb_002232_060 Hb_012022_140--Hb_002232_060 Hb_000676_310 Hb_000676_310 Hb_012022_140--Hb_000676_310 Hb_000771_060 Hb_000771_060 Hb_000815_290--Hb_000771_060 Hb_000059_010 Hb_000059_010 Hb_000815_290--Hb_000059_010 Hb_000815_290--Hb_005054_260 Hb_005496_090 Hb_005496_090 Hb_000815_290--Hb_005496_090 Hb_130719_010 Hb_130719_010 Hb_000815_290--Hb_130719_010 Hb_009075_010 Hb_009075_010 Hb_000739_140--Hb_009075_010 Hb_000739_140--Hb_005054_260 Hb_005306_070 Hb_005306_070 Hb_000739_140--Hb_005306_070 Hb_000768_130 Hb_000768_130 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_001410_060 Hb_001410_060 Hb_000739_140--Hb_001410_060 Hb_005054_260--Hb_009075_010 Hb_001979_020 Hb_001979_020 Hb_005054_260--Hb_001979_020 Hb_003020_150 Hb_003020_150 Hb_005054_260--Hb_003020_150 Hb_000384_120 Hb_000384_120 Hb_005054_260--Hb_000384_120 Hb_000163_050 Hb_000163_050 Hb_005054_260--Hb_000163_050 Hb_004679_060 Hb_004679_060 Hb_170426_010--Hb_004679_060 Hb_004787_040 Hb_004787_040 Hb_170426_010--Hb_004787_040 Hb_020805_060 Hb_020805_060 Hb_170426_010--Hb_020805_060 Hb_000189_540 Hb_000189_540 Hb_170426_010--Hb_000189_540 Hb_000011_300 Hb_000011_300 Hb_170426_010--Hb_000011_300 Hb_000005_300--Hb_001373_060 Hb_000005_300--Hb_001252_220 Hb_000005_300--Hb_001979_020 Hb_000215_330 Hb_000215_330 Hb_000005_300--Hb_000215_330 Hb_000005_300--Hb_000739_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64265 3.13352 8.00544 8.77314 1.11951 0.88972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.84539 24.2681 9.45653 5.03064 6.1877

CAGE analysis