Hb_020805_060

Information

Type -
Description -
Location Contig20805: 47582-52881
Sequence    

Annotation

kegg
ID rcu:RCOM_1601750
description zinc finger protein, putative
nr
ID XP_012073606.1
description PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
swissprot
ID Q6DR03
description Protein S-acyltransferase 21 OS=Arabidopsis thaliana GN=PAT21 PE=2 SV=1
trembl
ID A0A067KKY7
description S-acyltransferase OS=Jatropha curcas GN=JCGZ_08053 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein s-acyltransferase 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21519: 48467-49772 , PASA_asmbl_21520: 49783-53182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_060 0.0 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
2 Hb_000768_140 0.1119194716 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
3 Hb_001164_030 0.1432957228 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
4 Hb_000011_300 0.1464786816 - - PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
5 Hb_000189_540 0.1475871026 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
6 Hb_170426_010 0.1493610804 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
7 Hb_004787_040 0.1572360892 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000291_270 0.1629499728 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
9 Hb_004679_060 0.1677877875 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000155_090 0.1699944379 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
11 Hb_000270_740 0.1776022505 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
12 Hb_001016_080 0.1776205917 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
13 Hb_000483_090 0.1776685726 - - -
14 Hb_000031_080 0.1849846157 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
15 Hb_000768_130 0.1916241653 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
16 Hb_154141_030 0.191679982 - - PREDICTED: histone H2AX [Populus euphratica]
17 Hb_098533_020 0.1955731349 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
18 Hb_000465_510 0.1964754878 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
19 Hb_002900_130 0.196646425 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
20 Hb_002243_060 0.1975492276 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]

Gene co-expression network

sample Hb_020805_060 Hb_020805_060 Hb_000768_140 Hb_000768_140 Hb_020805_060--Hb_000768_140 Hb_001164_030 Hb_001164_030 Hb_020805_060--Hb_001164_030 Hb_000011_300 Hb_000011_300 Hb_020805_060--Hb_000011_300 Hb_000189_540 Hb_000189_540 Hb_020805_060--Hb_000189_540 Hb_170426_010 Hb_170426_010 Hb_020805_060--Hb_170426_010 Hb_004787_040 Hb_004787_040 Hb_020805_060--Hb_004787_040 Hb_000768_140--Hb_001164_030 Hb_001016_080 Hb_001016_080 Hb_000768_140--Hb_001016_080 Hb_002243_060 Hb_002243_060 Hb_000768_140--Hb_002243_060 Hb_000768_140--Hb_000189_540 Hb_000291_270 Hb_000291_270 Hb_000768_140--Hb_000291_270 Hb_000483_090 Hb_000483_090 Hb_001164_030--Hb_000483_090 Hb_001164_030--Hb_000291_270 Hb_091889_010 Hb_091889_010 Hb_001164_030--Hb_091889_010 Hb_000120_150 Hb_000120_150 Hb_001164_030--Hb_000120_150 Hb_000011_300--Hb_000189_540 Hb_000011_300--Hb_170426_010 Hb_000011_300--Hb_000291_270 Hb_004089_020 Hb_004089_020 Hb_000011_300--Hb_004089_020 Hb_000005_300 Hb_000005_300 Hb_000011_300--Hb_000005_300 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_002686_180 Hb_002686_180 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_000155_090 Hb_000155_090 Hb_000189_540--Hb_000155_090 Hb_000152_210 Hb_000152_210 Hb_000189_540--Hb_000152_210 Hb_004679_060 Hb_004679_060 Hb_170426_010--Hb_004679_060 Hb_170426_010--Hb_004089_020 Hb_170426_010--Hb_004787_040 Hb_170426_010--Hb_000189_540 Hb_002309_050 Hb_002309_050 Hb_004787_040--Hb_002309_050 Hb_000270_740 Hb_000270_740 Hb_004787_040--Hb_000270_740 Hb_004787_040--Hb_004679_060 Hb_004787_040--Hb_000189_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225554 1.8179 4.80815 7.55658 0.0394388 0.10614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57503 19.2754 3.44948 1.8397 1.92204

CAGE analysis