Hb_000120_150

Information

Type -
Description -
Location Contig120: 90181-101932
Sequence    

Annotation

kegg
ID rcu:RCOM_0612610
description Omega-3 fatty acid desaturase, endoplasmic reticulum, putative (EC:1.14.99.33)
nr
ID KDP46481.1
description hypothetical protein JCGZ_08453 [Jatropha curcas]
swissprot
ID P48620
description Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1
trembl
ID A0A067LDB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08453 PE=4 SV=1
Gene Ontology
ID GO:0016717
description omega-3 fatty acid desaturase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06063: 90363-92480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_150 0.0 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
2 Hb_000072_340 0.1588605617 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010506_010 0.1682387671 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
4 Hb_004787_040 0.1839330991 - - conserved hypothetical protein [Ricinus communis]
5 Hb_091889_010 0.1849543191 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
6 Hb_001164_030 0.1881949146 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
7 Hb_000270_740 0.1887410986 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
8 Hb_000768_140 0.191983478 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
9 Hb_006570_050 0.1961499775 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
10 Hb_020805_060 0.1975636378 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
11 Hb_006907_080 0.1975733222 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
12 Hb_140049_010 0.2003143948 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
13 Hb_002227_010 0.2028858535 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Populus euphratica]
14 Hb_002217_460 0.2119725508 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
15 Hb_000483_090 0.2238108447 - - -
16 Hb_000291_270 0.2279591558 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
17 Hb_000891_030 0.2365094701 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
18 Hb_000117_100 0.2390201979 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000886_030 0.2480651185 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
20 Hb_170426_010 0.2494711775 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]

Gene co-expression network

sample Hb_000120_150 Hb_000120_150 Hb_000072_340 Hb_000072_340 Hb_000120_150--Hb_000072_340 Hb_010506_010 Hb_010506_010 Hb_000120_150--Hb_010506_010 Hb_004787_040 Hb_004787_040 Hb_000120_150--Hb_004787_040 Hb_091889_010 Hb_091889_010 Hb_000120_150--Hb_091889_010 Hb_001164_030 Hb_001164_030 Hb_000120_150--Hb_001164_030 Hb_000270_740 Hb_000270_740 Hb_000120_150--Hb_000270_740 Hb_000483_090 Hb_000483_090 Hb_000072_340--Hb_000483_090 Hb_020805_060 Hb_020805_060 Hb_000072_340--Hb_020805_060 Hb_000072_340--Hb_000270_740 Hb_000291_270 Hb_000291_270 Hb_000072_340--Hb_000291_270 Hb_000768_140 Hb_000768_140 Hb_000072_340--Hb_000768_140 Hb_010506_010--Hb_091889_010 Hb_140049_010 Hb_140049_010 Hb_010506_010--Hb_140049_010 Hb_010506_010--Hb_004787_040 Hb_010506_010--Hb_001164_030 Hb_005162_100 Hb_005162_100 Hb_010506_010--Hb_005162_100 Hb_002309_050 Hb_002309_050 Hb_004787_040--Hb_002309_050 Hb_170426_010 Hb_170426_010 Hb_004787_040--Hb_170426_010 Hb_004787_040--Hb_000270_740 Hb_004787_040--Hb_020805_060 Hb_004679_060 Hb_004679_060 Hb_004787_040--Hb_004679_060 Hb_000189_540 Hb_000189_540 Hb_004787_040--Hb_000189_540 Hb_091889_010--Hb_001164_030 Hb_000943_060 Hb_000943_060 Hb_091889_010--Hb_000943_060 Hb_002217_460 Hb_002217_460 Hb_091889_010--Hb_002217_460 Hb_011628_020 Hb_011628_020 Hb_091889_010--Hb_011628_020 Hb_001164_030--Hb_020805_060 Hb_001164_030--Hb_000768_140 Hb_001164_030--Hb_000483_090 Hb_001164_030--Hb_000291_270 Hb_007441_240 Hb_007441_240 Hb_000270_740--Hb_007441_240 Hb_000739_140 Hb_000739_140 Hb_000270_740--Hb_000739_140 Hb_000768_130 Hb_000768_130 Hb_000270_740--Hb_000768_130 Hb_158104_020 Hb_158104_020 Hb_000270_740--Hb_158104_020 Hb_000382_020 Hb_000382_020 Hb_000270_740--Hb_000382_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0822707 2.01051 0.894564 5.02831 0 0.0247321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55724 7.90893 2.57151 1.13857 0.269789

CAGE analysis