Hb_007441_240

Information

Type -
Description -
Location Contig7441: 162894-163837
Sequence    

Annotation

kegg
ID rcu:RCOM_0658620
description hypothetical protein
nr
ID ABR09296.1
description ethphon-induced protein [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID A5Z1R3
description Ethphon-induced protein OS=Hevea brasiliensis GN=EtIe PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56637: 163031-163835
cDNA
(Sanger)
(ID:Location)		 018_K10.ab1: 163141-163835 , 046_K12.ab1: 163033-163828

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_240 0.0 - - ethphon-induced protein [Hevea brasiliensis]
2 Hb_000110_120 0.1193316702 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
3 Hb_000077_180 0.119551277 - - -
4 Hb_000739_140 0.1207057238 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
5 Hb_000317_420 0.12087068 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
6 Hb_028049_010 0.1239335025 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_000771_060 0.1292470008 - - PREDICTED: spermine synthase [Jatropha curcas]
8 Hb_001410_060 0.1347014309 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
9 Hb_000270_740 0.1386061001 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
10 Hb_005460_060 0.14202163 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
11 Hb_000377_120 0.1455654928 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_002768_090 0.1463305815 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
13 Hb_009075_010 0.1475779598 - - 60S ribosomal protein L10B [Hevea brasiliensis]
14 Hb_001322_070 0.150030949 - - protein with unknown function [Ricinus communis]
15 Hb_017491_020 0.1500898874 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
16 Hb_158104_020 0.1514926569 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
17 Hb_000210_060 0.1530409444 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
18 Hb_005306_070 0.1531644649 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
19 Hb_098315_020 0.1556261485 - - hypothetical protein M569_15712 [Genlisea aurea]
20 Hb_000163_050 0.1564927307 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]

Gene co-expression network

sample Hb_007441_240 Hb_007441_240 Hb_000110_120 Hb_000110_120 Hb_007441_240--Hb_000110_120 Hb_000077_180 Hb_000077_180 Hb_007441_240--Hb_000077_180 Hb_000739_140 Hb_000739_140 Hb_007441_240--Hb_000739_140 Hb_000317_420 Hb_000317_420 Hb_007441_240--Hb_000317_420 Hb_028049_010 Hb_028049_010 Hb_007441_240--Hb_028049_010 Hb_000771_060 Hb_000771_060 Hb_007441_240--Hb_000771_060 Hb_002301_160 Hb_002301_160 Hb_000110_120--Hb_002301_160 Hb_005460_060 Hb_005460_060 Hb_000110_120--Hb_005460_060 Hb_012305_130 Hb_012305_130 Hb_000110_120--Hb_012305_130 Hb_000009_290 Hb_000009_290 Hb_000110_120--Hb_000009_290 Hb_004627_030 Hb_004627_030 Hb_000110_120--Hb_004627_030 Hb_000110_120--Hb_000077_180 Hb_000377_120 Hb_000377_120 Hb_000077_180--Hb_000377_120 Hb_001410_060 Hb_001410_060 Hb_000077_180--Hb_001410_060 Hb_017491_020 Hb_017491_020 Hb_000077_180--Hb_017491_020 Hb_000077_180--Hb_005460_060 Hb_000077_180--Hb_000009_290 Hb_009075_010 Hb_009075_010 Hb_000739_140--Hb_009075_010 Hb_005054_260 Hb_005054_260 Hb_000739_140--Hb_005054_260 Hb_005306_070 Hb_005306_070 Hb_000739_140--Hb_005306_070 Hb_000768_130 Hb_000768_130 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_000739_140--Hb_001410_060 Hb_006836_030 Hb_006836_030 Hb_000317_420--Hb_006836_030 Hb_004007_110 Hb_004007_110 Hb_000317_420--Hb_004007_110 Hb_000723_170 Hb_000723_170 Hb_000317_420--Hb_000723_170 Hb_001975_040 Hb_001975_040 Hb_000317_420--Hb_001975_040 Hb_158104_020 Hb_158104_020 Hb_000317_420--Hb_158104_020 Hb_028049_010--Hb_012305_130 Hb_028049_010--Hb_000110_120 Hb_028049_010--Hb_004007_110 Hb_021409_080 Hb_021409_080 Hb_028049_010--Hb_021409_080 Hb_028049_010--Hb_000771_060 Hb_000428_060 Hb_000428_060 Hb_028049_010--Hb_000428_060 Hb_000815_290 Hb_000815_290 Hb_000771_060--Hb_000815_290 Hb_000771_060--Hb_000428_060 Hb_000008_400 Hb_000008_400 Hb_000771_060--Hb_000008_400 Hb_000771_060--Hb_000739_140 Hb_001016_100 Hb_001016_100 Hb_000771_060--Hb_001016_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5286 22.1393 56.6062 130.165 5.33585 10.0067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.258 143.199 52.2904 79.8457 33.9627

CAGE analysis