Hb_000008_400

Information

Type -
Description -
Location Contig8: 481760-482293
Sequence    

Annotation

kegg
ID pxb:103956776
description classical arabinogalactan protein 4
nr
ID XP_009595128.1
description PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A0A067L9Y8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05525 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_400 0.0 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
2 Hb_000771_060 0.1082169149 - - PREDICTED: spermine synthase [Jatropha curcas]
3 Hb_000300_700 0.1180208251 - - PREDICTED: adenylyl-sulfate kinase 3 [Jatropha curcas]
4 Hb_154038_020 0.1341214753 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
5 Hb_065525_120 0.1364243184 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
6 Hb_004931_110 0.1418339538 - - inorganic phosphate transporter, putative [Ricinus communis]
7 Hb_000815_290 0.1444600053 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
8 Hb_000032_370 0.1446278614 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
9 Hb_004814_010 0.1498191508 - - PREDICTED: uncharacterized protein LOC105633486 [Jatropha curcas]
10 Hb_028049_010 0.1522893902 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_002045_060 0.1522978043 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
12 Hb_004089_020 0.1561540323 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
13 Hb_001153_120 0.1561826528 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
14 Hb_000946_100 0.15760517 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
15 Hb_007894_050 0.1579914203 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
16 Hb_004317_030 0.159022915 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
17 Hb_002217_100 0.1593808967 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
18 Hb_005460_060 0.1605576817 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
19 Hb_001016_100 0.160678801 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
20 Hb_027298_010 0.1607791715 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000008_400 Hb_000008_400 Hb_000771_060 Hb_000771_060 Hb_000008_400--Hb_000771_060 Hb_000300_700 Hb_000300_700 Hb_000008_400--Hb_000300_700 Hb_154038_020 Hb_154038_020 Hb_000008_400--Hb_154038_020 Hb_065525_120 Hb_065525_120 Hb_000008_400--Hb_065525_120 Hb_004931_110 Hb_004931_110 Hb_000008_400--Hb_004931_110 Hb_000815_290 Hb_000815_290 Hb_000008_400--Hb_000815_290 Hb_000771_060--Hb_000815_290 Hb_000428_060 Hb_000428_060 Hb_000771_060--Hb_000428_060 Hb_028049_010 Hb_028049_010 Hb_000771_060--Hb_028049_010 Hb_000739_140 Hb_000739_140 Hb_000771_060--Hb_000739_140 Hb_001016_100 Hb_001016_100 Hb_000771_060--Hb_001016_100 Hb_009111_020 Hb_009111_020 Hb_000300_700--Hb_009111_020 Hb_002671_090 Hb_002671_090 Hb_000300_700--Hb_002671_090 Hb_000300_700--Hb_004931_110 Hb_000300_700--Hb_065525_120 Hb_004965_110 Hb_004965_110 Hb_000300_700--Hb_004965_110 Hb_003602_060 Hb_003602_060 Hb_154038_020--Hb_003602_060 Hb_001767_060 Hb_001767_060 Hb_154038_020--Hb_001767_060 Hb_154038_020--Hb_065525_120 Hb_009780_050 Hb_009780_050 Hb_154038_020--Hb_009780_050 Hb_001904_050 Hb_001904_050 Hb_154038_020--Hb_001904_050 Hb_093458_010 Hb_093458_010 Hb_154038_020--Hb_093458_010 Hb_000032_370 Hb_000032_370 Hb_065525_120--Hb_000032_370 Hb_027298_010 Hb_027298_010 Hb_065525_120--Hb_027298_010 Hb_065525_120--Hb_009780_050 Hb_001671_030 Hb_001671_030 Hb_065525_120--Hb_001671_030 Hb_007441_080 Hb_007441_080 Hb_065525_120--Hb_007441_080 Hb_004931_110--Hb_093458_010 Hb_002217_100 Hb_002217_100 Hb_004931_110--Hb_002217_100 Hb_004931_110--Hb_002671_090 Hb_001221_330 Hb_001221_330 Hb_004931_110--Hb_001221_330 Hb_000059_010 Hb_000059_010 Hb_000815_290--Hb_000059_010 Hb_005054_260 Hb_005054_260 Hb_000815_290--Hb_005054_260 Hb_005496_090 Hb_005496_090 Hb_000815_290--Hb_005496_090 Hb_004089_020 Hb_004089_020 Hb_000815_290--Hb_004089_020 Hb_130719_010 Hb_130719_010 Hb_000815_290--Hb_130719_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.55415 3.67657 25.254 27.1405 1.35851 1.55489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.434 33.103 25.7139 9.25341 17.2594

CAGE analysis