Hb_001671_030

Information

Type -
Description -
Location Contig1671: 13979-18493
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09740g
description POPTRDRAFT_731397; Calcium-transporting ATPase 2 family protein
nr
ID XP_012083146.1
description PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
swissprot
ID Q42883
description Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1
trembl
ID A0A067K9F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14220 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting endoplasmic reticulum-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15421: 16046-17116 , PASA_asmbl_15423: 18647-18867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_030 0.0 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
2 Hb_005016_040 0.1033806992 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
3 Hb_007192_030 0.1037517853 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
4 Hb_001754_080 0.1143063766 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
5 Hb_011606_020 0.1165840718 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
6 Hb_065525_120 0.1207745803 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
7 Hb_002677_020 0.1209008097 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
8 Hb_003453_050 0.1215781242 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
9 Hb_000394_180 0.1240055166 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
10 Hb_007441_080 0.1267815086 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
11 Hb_002110_100 0.127280479 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
12 Hb_001277_100 0.1288196252 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
13 Hb_007101_110 0.1289349849 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
14 Hb_004965_110 0.1300766078 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
15 Hb_004158_020 0.1308094222 - - Rab1 [Hevea brasiliensis]
16 Hb_000086_080 0.131631316 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000622_290 0.1319832631 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
18 Hb_006153_060 0.1326345163 - - catalytic, putative [Ricinus communis]
19 Hb_001369_790 0.1335149362 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
20 Hb_004951_060 0.1340811857 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]

Gene co-expression network

sample Hb_001671_030 Hb_001671_030 Hb_005016_040 Hb_005016_040 Hb_001671_030--Hb_005016_040 Hb_007192_030 Hb_007192_030 Hb_001671_030--Hb_007192_030 Hb_001754_080 Hb_001754_080 Hb_001671_030--Hb_001754_080 Hb_011606_020 Hb_011606_020 Hb_001671_030--Hb_011606_020 Hb_065525_120 Hb_065525_120 Hb_001671_030--Hb_065525_120 Hb_002677_020 Hb_002677_020 Hb_001671_030--Hb_002677_020 Hb_008421_020 Hb_008421_020 Hb_005016_040--Hb_008421_020 Hb_013405_020 Hb_013405_020 Hb_005016_040--Hb_013405_020 Hb_000140_090 Hb_000140_090 Hb_005016_040--Hb_000140_090 Hb_000811_070 Hb_000811_070 Hb_005016_040--Hb_000811_070 Hb_005167_010 Hb_005167_010 Hb_005016_040--Hb_005167_010 Hb_000080_130 Hb_000080_130 Hb_005016_040--Hb_000080_130 Hb_001369_790 Hb_001369_790 Hb_007192_030--Hb_001369_790 Hb_000086_080 Hb_000086_080 Hb_007192_030--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_007192_030--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_007192_030--Hb_000622_290 Hb_007904_230 Hb_007904_230 Hb_007192_030--Hb_007904_230 Hb_004951_060 Hb_004951_060 Hb_007192_030--Hb_004951_060 Hb_000060_050 Hb_000060_050 Hb_001754_080--Hb_000060_050 Hb_004158_020 Hb_004158_020 Hb_001754_080--Hb_004158_020 Hb_003305_040 Hb_003305_040 Hb_001754_080--Hb_003305_040 Hb_001489_110 Hb_001489_110 Hb_001754_080--Hb_001489_110 Hb_002110_100 Hb_002110_100 Hb_001754_080--Hb_002110_100 Hb_001754_080--Hb_002677_020 Hb_000116_130 Hb_000116_130 Hb_011606_020--Hb_000116_130 Hb_000107_430 Hb_000107_430 Hb_011606_020--Hb_000107_430 Hb_001226_140 Hb_001226_140 Hb_011606_020--Hb_001226_140 Hb_001080_300 Hb_001080_300 Hb_011606_020--Hb_001080_300 Hb_011606_020--Hb_002110_100 Hb_011139_040 Hb_011139_040 Hb_011606_020--Hb_011139_040 Hb_000032_370 Hb_000032_370 Hb_065525_120--Hb_000032_370 Hb_027298_010 Hb_027298_010 Hb_065525_120--Hb_027298_010 Hb_009780_050 Hb_009780_050 Hb_065525_120--Hb_009780_050 Hb_154038_020 Hb_154038_020 Hb_065525_120--Hb_154038_020 Hb_007441_080 Hb_007441_080 Hb_065525_120--Hb_007441_080 Hb_000733_180 Hb_000733_180 Hb_002677_020--Hb_000733_180 Hb_008566_030 Hb_008566_030 Hb_002677_020--Hb_008566_030 Hb_002677_020--Hb_001489_110 Hb_000403_070 Hb_000403_070 Hb_002677_020--Hb_000403_070 Hb_002677_020--Hb_005016_040 Hb_006153_060 Hb_006153_060 Hb_002677_020--Hb_006153_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.951312 1.64835 3.35483 5.95009 1.31721 1.02375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.20788 4.40754 2.87937 0.984276 5.03876

CAGE analysis