Hb_000116_130

Information

Type -
Description -
Location Contig116: 120171-124554
Sequence    

Annotation

kegg
ID rcu:RCOM_1698140
description nucellin, putative
nr
ID XP_012087626.1
description PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
swissprot
ID Q0IU52
description Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1
trembl
ID A0A067JPS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25323 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase asp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04819: 120178-124389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_130 0.0 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
2 Hb_012573_050 0.0877497272 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
3 Hb_011606_020 0.0885162541 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
4 Hb_170138_010 0.0889389299 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000077_150 0.0966074927 - - PREDICTED: riboflavin synthase [Jatropha curcas]
6 Hb_000107_430 0.0966216713 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
7 Hb_001663_040 0.0979210508 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
8 Hb_006277_010 0.1050741405 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
9 Hb_000645_280 0.1058445341 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
10 Hb_004644_030 0.1060269609 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
11 Hb_002392_010 0.1090820639 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
12 Hb_005601_040 0.1097374409 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
13 Hb_001946_380 0.1106695624 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
14 Hb_000172_580 0.1111980544 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002078_340 0.1112379668 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
16 Hb_002025_250 0.1130546185 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
17 Hb_121089_040 0.1146926437 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
18 Hb_000167_110 0.1160167864 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_000684_210 0.1162315716 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
20 Hb_005800_030 0.1166478974 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000116_130 Hb_000116_130 Hb_012573_050 Hb_012573_050 Hb_000116_130--Hb_012573_050 Hb_011606_020 Hb_011606_020 Hb_000116_130--Hb_011606_020 Hb_170138_010 Hb_170138_010 Hb_000116_130--Hb_170138_010 Hb_000077_150 Hb_000077_150 Hb_000116_130--Hb_000077_150 Hb_000107_430 Hb_000107_430 Hb_000116_130--Hb_000107_430 Hb_001663_040 Hb_001663_040 Hb_000116_130--Hb_001663_040 Hb_000244_180 Hb_000244_180 Hb_012573_050--Hb_000244_180 Hb_156850_100 Hb_156850_100 Hb_012573_050--Hb_156850_100 Hb_000721_030 Hb_000721_030 Hb_012573_050--Hb_000721_030 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_007975_060 Hb_007975_060 Hb_012573_050--Hb_007975_060 Hb_011606_020--Hb_000107_430 Hb_001226_140 Hb_001226_140 Hb_011606_020--Hb_001226_140 Hb_001080_300 Hb_001080_300 Hb_011606_020--Hb_001080_300 Hb_002110_100 Hb_002110_100 Hb_011606_020--Hb_002110_100 Hb_011139_040 Hb_011139_040 Hb_011606_020--Hb_011139_040 Hb_003206_110 Hb_003206_110 Hb_170138_010--Hb_003206_110 Hb_001195_400 Hb_001195_400 Hb_170138_010--Hb_001195_400 Hb_000185_220 Hb_000185_220 Hb_170138_010--Hb_000185_220 Hb_004046_030 Hb_004046_030 Hb_170138_010--Hb_004046_030 Hb_000359_210 Hb_000359_210 Hb_170138_010--Hb_000359_210 Hb_000684_210 Hb_000684_210 Hb_170138_010--Hb_000684_210 Hb_004644_030 Hb_004644_030 Hb_000077_150--Hb_004644_030 Hb_002762_110 Hb_002762_110 Hb_000077_150--Hb_002762_110 Hb_001214_050 Hb_001214_050 Hb_000077_150--Hb_001214_050 Hb_003106_190 Hb_003106_190 Hb_000077_150--Hb_003106_190 Hb_002078_340 Hb_002078_340 Hb_000077_150--Hb_002078_340 Hb_002811_010 Hb_002811_010 Hb_000077_150--Hb_002811_010 Hb_000107_430--Hb_002762_110 Hb_003053_110 Hb_003053_110 Hb_000107_430--Hb_003053_110 Hb_007741_110 Hb_007741_110 Hb_000107_430--Hb_007741_110 Hb_007192_030 Hb_007192_030 Hb_000107_430--Hb_007192_030 Hb_000107_430--Hb_000167_110 Hb_000107_430--Hb_004644_030 Hb_003875_030 Hb_003875_030 Hb_001663_040--Hb_003875_030 Hb_000181_350 Hb_000181_350 Hb_001663_040--Hb_000181_350 Hb_000638_070 Hb_000638_070 Hb_001663_040--Hb_000638_070 Hb_002392_010 Hb_002392_010 Hb_001663_040--Hb_002392_010 Hb_001663_040--Hb_012573_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14775 1.83449 5.65788 9.14786 3.87067 3.46043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.35515 5.0892 6.93538 4.36934 12.636

CAGE analysis