Hb_000181_350

Information

Type -
Description -
Location Contig181: 325804-335200
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11990g
description POPTRDRAFT_888862; hypothetical protein
nr
ID XP_011004637.1
description PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HZU5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11990g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17548: 332352-332784 , PASA_asmbl_17549: 330311-333272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_350 0.0 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
2 Hb_001663_040 0.0875160032 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
3 Hb_007101_110 0.0926029327 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
4 Hb_000057_110 0.0942248556 - - PREDICTED: kinesin-13A [Jatropha curcas]
5 Hb_000200_300 0.0987277623 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
6 Hb_000684_030 0.100517145 - - syntaxin, putative [Ricinus communis]
7 Hb_000062_330 0.1104186108 - - unknown [Lotus japonicus]
8 Hb_003266_030 0.1111555322 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
9 Hb_001221_030 0.111571102 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
10 Hb_004965_110 0.1118210554 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
11 Hb_010368_050 0.111895187 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
12 Hb_000244_170 0.1124827786 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
13 Hb_002184_090 0.1127854882 - - DNA binding protein, putative [Ricinus communis]
14 Hb_166574_010 0.1132876736 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
15 Hb_000765_060 0.1135139009 - - Alcohol dehydrogenase-like 6 [Glycine soja]
16 Hb_002174_040 0.1149801952 - - DNAJ heat shock family protein [Theobroma cacao]
17 Hb_012573_050 0.1150197759 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
18 Hb_007894_010 0.1179659974 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
19 Hb_000721_030 0.1179768617 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
20 Hb_000364_170 0.1179921316 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]

Gene co-expression network

sample Hb_000181_350 Hb_000181_350 Hb_001663_040 Hb_001663_040 Hb_000181_350--Hb_001663_040 Hb_007101_110 Hb_007101_110 Hb_000181_350--Hb_007101_110 Hb_000057_110 Hb_000057_110 Hb_000181_350--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000181_350--Hb_000200_300 Hb_000684_030 Hb_000684_030 Hb_000181_350--Hb_000684_030 Hb_000062_330 Hb_000062_330 Hb_000181_350--Hb_000062_330 Hb_003875_030 Hb_003875_030 Hb_001663_040--Hb_003875_030 Hb_000638_070 Hb_000638_070 Hb_001663_040--Hb_000638_070 Hb_002392_010 Hb_002392_010 Hb_001663_040--Hb_002392_010 Hb_012573_050 Hb_012573_050 Hb_001663_040--Hb_012573_050 Hb_000116_130 Hb_000116_130 Hb_001663_040--Hb_000116_130 Hb_000365_130 Hb_000365_130 Hb_007101_110--Hb_000365_130 Hb_004965_110 Hb_004965_110 Hb_007101_110--Hb_004965_110 Hb_083380_020 Hb_083380_020 Hb_007101_110--Hb_083380_020 Hb_007101_110--Hb_000062_330 Hb_002184_090 Hb_002184_090 Hb_007101_110--Hb_002184_090 Hb_000057_110--Hb_000684_030 Hb_000057_110--Hb_000200_300 Hb_000364_170 Hb_000364_170 Hb_000057_110--Hb_000364_170 Hb_000012_080 Hb_000012_080 Hb_000057_110--Hb_000012_080 Hb_006829_060 Hb_006829_060 Hb_000057_110--Hb_006829_060 Hb_008725_270 Hb_008725_270 Hb_000057_110--Hb_008725_270 Hb_000926_080 Hb_000926_080 Hb_000200_300--Hb_000926_080 Hb_003266_030 Hb_003266_030 Hb_000200_300--Hb_003266_030 Hb_000200_300--Hb_004965_110 Hb_000200_300--Hb_000684_030 Hb_000086_080 Hb_000086_080 Hb_000200_300--Hb_000086_080 Hb_001221_030 Hb_001221_030 Hb_000684_030--Hb_001221_030 Hb_000174_260 Hb_000174_260 Hb_000684_030--Hb_000174_260 Hb_000684_030--Hb_003266_030 Hb_003605_020 Hb_003605_020 Hb_000684_030--Hb_003605_020 Hb_000244_170 Hb_000244_170 Hb_000062_330--Hb_000244_170 Hb_007811_040 Hb_007811_040 Hb_000062_330--Hb_007811_040 Hb_002687_120 Hb_002687_120 Hb_000062_330--Hb_002687_120 Hb_000832_190 Hb_000832_190 Hb_000062_330--Hb_000832_190 Hb_000890_130 Hb_000890_130 Hb_000062_330--Hb_000890_130 Hb_001195_060 Hb_001195_060 Hb_000062_330--Hb_001195_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.421508 0.295595 2.79705 2.8451 0.652488 0.910172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08443 1.35742 1.32087 0.864752 1.92145

CAGE analysis