Hb_007811_040

Information

Type -
Description -
Location Contig7811: 50576-53291
Sequence    

Annotation

kegg
ID cit:102619996
description trafficking protein particle complex subunit 4-like
nr
ID XP_012486075.1
description PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
swissprot
ID Q54UU1
description Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1
trembl
ID A0A0D2RXT8
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G172500 PE=4 SV=1
Gene Ontology
ID GO:0005737
description trafficking protein particle complex subunit 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57977: 49361-49887 , PASA_asmbl_57978: 50254-53278 , PASA_asmbl_57979: 50254-53278 , PASA_asmbl_57980: 51667-52981
cDNA
(Sanger)
(ID:Location)		 019_J08.ab1: 50254-52985

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007811_040 0.0 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
2 Hb_000062_330 0.0914745905 - - unknown [Lotus japonicus]
3 Hb_010577_030 0.0924504063 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
4 Hb_000832_190 0.1129314234 - - Rab3 [Hevea brasiliensis]
5 Hb_004041_020 0.114048031 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
6 Hb_003119_060 0.1154455828 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
7 Hb_000890_130 0.1202551324 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
8 Hb_002304_150 0.1206628943 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
9 Hb_002687_120 0.1235093488 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
10 Hb_003728_060 0.1259471848 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
11 Hb_001799_030 0.126191155 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
12 Hb_000163_100 0.1272445381 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
13 Hb_001252_240 0.1276311538 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
14 Hb_000046_040 0.1277389859 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000028_070 0.1285250078 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
16 Hb_000413_240 0.1292255361 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
17 Hb_007017_080 0.1293459465 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_002946_190 0.1310446472 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
19 Hb_000365_130 0.1348995911 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
20 Hb_000774_020 0.1372139577 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_007811_040 Hb_007811_040 Hb_000062_330 Hb_000062_330 Hb_007811_040--Hb_000062_330 Hb_010577_030 Hb_010577_030 Hb_007811_040--Hb_010577_030 Hb_000832_190 Hb_000832_190 Hb_007811_040--Hb_000832_190 Hb_004041_020 Hb_004041_020 Hb_007811_040--Hb_004041_020 Hb_003119_060 Hb_003119_060 Hb_007811_040--Hb_003119_060 Hb_000890_130 Hb_000890_130 Hb_007811_040--Hb_000890_130 Hb_000244_170 Hb_000244_170 Hb_000062_330--Hb_000244_170 Hb_002687_120 Hb_002687_120 Hb_000062_330--Hb_002687_120 Hb_000062_330--Hb_000832_190 Hb_000062_330--Hb_000890_130 Hb_001195_060 Hb_001195_060 Hb_000062_330--Hb_001195_060 Hb_007017_080 Hb_007017_080 Hb_010577_030--Hb_007017_080 Hb_003849_130 Hb_003849_130 Hb_010577_030--Hb_003849_130 Hb_001124_070 Hb_001124_070 Hb_010577_030--Hb_001124_070 Hb_026549_020 Hb_026549_020 Hb_010577_030--Hb_026549_020 Hb_001799_030 Hb_001799_030 Hb_010577_030--Hb_001799_030 Hb_004984_030 Hb_004984_030 Hb_000832_190--Hb_004984_030 Hb_000429_040 Hb_000429_040 Hb_000832_190--Hb_000429_040 Hb_000832_190--Hb_004041_020 Hb_000926_200 Hb_000926_200 Hb_000832_190--Hb_000926_200 Hb_004965_110 Hb_004965_110 Hb_000832_190--Hb_004965_110 Hb_000413_240 Hb_000413_240 Hb_000832_190--Hb_000413_240 Hb_002946_190 Hb_002946_190 Hb_004041_020--Hb_002946_190 Hb_004041_020--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_004041_020--Hb_001863_380 Hb_004041_020--Hb_000429_040 Hb_000599_260 Hb_000599_260 Hb_004041_020--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_004041_020--Hb_012565_070 Hb_003119_060--Hb_000890_130 Hb_003119_060--Hb_002687_120 Hb_000028_520 Hb_000028_520 Hb_003119_060--Hb_000028_520 Hb_006132_090 Hb_006132_090 Hb_003119_060--Hb_006132_090 Hb_002157_120 Hb_002157_120 Hb_003119_060--Hb_002157_120 Hb_000774_020 Hb_000774_020 Hb_003119_060--Hb_000774_020 Hb_000890_130--Hb_002687_120 Hb_002686_080 Hb_002686_080 Hb_000890_130--Hb_002686_080 Hb_000890_130--Hb_000028_520 Hb_000270_680 Hb_000270_680 Hb_000890_130--Hb_000270_680 Hb_002304_150 Hb_002304_150 Hb_000890_130--Hb_002304_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0084 4.57674 47.28 26.8787 14.0381 10.727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9503 24.805 26.2198 10.2533 12.6372

CAGE analysis