Hb_004041_020

Information

Type -
Description -
Location Contig4041: 23067-28907
Sequence    

Annotation

kegg
ID rcu:RCOM_0713220
description ATP synthase D chain, mitochondrial, putative (EC:3.6.3.14)
nr
ID XP_002529702.1
description ATP synthase D chain, mitochondrial, putative [Ricinus communis]
swissprot
ID Q9FT52
description ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3
trembl
ID B9SUN3
description ATP synthase D chain, mitochondrial, putative OS=Ricinus communis GN=RCOM_0713220 PE=4 SV=1
Gene Ontology
ID GO:0000276
description atp synthase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40099: 23181-28888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004041_020 0.0 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
2 Hb_002946_190 0.0518615882 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
3 Hb_000413_240 0.0766433015 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
4 Hb_001863_380 0.0818634301 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
5 Hb_000429_040 0.085380344 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
6 Hb_000599_260 0.0858151024 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
7 Hb_012565_070 0.0871514603 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
8 Hb_000832_190 0.0871941412 - - Rab3 [Hevea brasiliensis]
9 Hb_000457_180 0.0874614069 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
10 Hb_001931_010 0.0883024437 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
11 Hb_000261_160 0.0895136569 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
12 Hb_001105_170 0.0940213753 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
13 Hb_000163_100 0.0947280123 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
14 Hb_020805_080 0.0947370083 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
15 Hb_000690_190 0.0956697043 - - 40S ribosomal protein S7, putative [Ricinus communis]
16 Hb_000676_390 0.0959838159 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
17 Hb_000359_150 0.0969641658 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
18 Hb_008071_020 0.0969848658 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
19 Hb_001472_100 0.0970672194 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
20 Hb_003848_040 0.0974214158 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004041_020 Hb_004041_020 Hb_002946_190 Hb_002946_190 Hb_004041_020--Hb_002946_190 Hb_000413_240 Hb_000413_240 Hb_004041_020--Hb_000413_240 Hb_001863_380 Hb_001863_380 Hb_004041_020--Hb_001863_380 Hb_000429_040 Hb_000429_040 Hb_004041_020--Hb_000429_040 Hb_000599_260 Hb_000599_260 Hb_004041_020--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_004041_020--Hb_012565_070 Hb_000690_190 Hb_000690_190 Hb_002946_190--Hb_000690_190 Hb_002946_190--Hb_001863_380 Hb_146673_010 Hb_146673_010 Hb_002946_190--Hb_146673_010 Hb_002946_190--Hb_000413_240 Hb_001472_100 Hb_001472_100 Hb_002946_190--Hb_001472_100 Hb_000163_100 Hb_000163_100 Hb_000413_240--Hb_000163_100 Hb_000413_240--Hb_001863_380 Hb_000390_090 Hb_000390_090 Hb_000413_240--Hb_000390_090 Hb_000413_060 Hb_000413_060 Hb_000413_240--Hb_000413_060 Hb_002343_040 Hb_002343_040 Hb_001863_380--Hb_002343_040 Hb_001863_380--Hb_012565_070 Hb_000373_050 Hb_000373_050 Hb_001863_380--Hb_000373_050 Hb_002759_190 Hb_002759_190 Hb_001863_380--Hb_002759_190 Hb_000832_190 Hb_000832_190 Hb_000429_040--Hb_000832_190 Hb_001377_450 Hb_001377_450 Hb_000429_040--Hb_001377_450 Hb_000429_040--Hb_000413_240 Hb_000429_040--Hb_000163_100 Hb_004984_030 Hb_004984_030 Hb_000429_040--Hb_004984_030 Hb_001931_010 Hb_001931_010 Hb_000599_260--Hb_001931_010 Hb_002307_180 Hb_002307_180 Hb_000599_260--Hb_002307_180 Hb_002171_060 Hb_002171_060 Hb_000599_260--Hb_002171_060 Hb_000505_130 Hb_000505_130 Hb_000599_260--Hb_000505_130 Hb_000599_260--Hb_001472_100 Hb_000599_260--Hb_012565_070 Hb_000300_260 Hb_000300_260 Hb_012565_070--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_012565_070--Hb_003848_040 Hb_000457_180 Hb_000457_180 Hb_012565_070--Hb_000457_180 Hb_012565_070--Hb_002307_180 Hb_001105_170 Hb_001105_170 Hb_012565_070--Hb_001105_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.703 51.6971 258.08 157.711 89.1205 82.0405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.839 254.821 121.067 87.1073 96.3782

CAGE analysis