Hb_002946_190

Information

Type -
Description -
Location Contig2946: 274163-279381
Sequence    

Annotation

kegg
ID pop:POPTR_0008s01880g
description POPTRDRAFT_720478; hypothetical protein
nr
ID XP_012074647.1
description PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
swissprot
ID Q9CAF2
description Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1
trembl
ID A0A067KU88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10650 PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30828: 274221-279203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002946_190 0.0 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
2 Hb_004041_020 0.0518615882 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
3 Hb_000690_190 0.0671750772 - - 40S ribosomal protein S7, putative [Ricinus communis]
4 Hb_001863_380 0.0690976472 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
5 Hb_146673_010 0.0785988595 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
6 Hb_000413_240 0.0808120731 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
7 Hb_001472_100 0.0817496079 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
8 Hb_012565_070 0.0821346921 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_000599_260 0.0830504431 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
10 Hb_000300_260 0.083395372 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
11 Hb_000649_230 0.0853412309 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
12 Hb_003848_040 0.0867226484 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
13 Hb_002307_180 0.0890056181 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
14 Hb_000185_050 0.0894201576 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
15 Hb_000163_100 0.0896769276 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
16 Hb_001105_170 0.0900561527 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
17 Hb_000465_090 0.0907791514 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
18 Hb_000270_470 0.0910112358 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
19 Hb_000297_160 0.0913624638 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
20 Hb_000261_160 0.0930923292 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002946_190 Hb_002946_190 Hb_004041_020 Hb_004041_020 Hb_002946_190--Hb_004041_020 Hb_000690_190 Hb_000690_190 Hb_002946_190--Hb_000690_190 Hb_001863_380 Hb_001863_380 Hb_002946_190--Hb_001863_380 Hb_146673_010 Hb_146673_010 Hb_002946_190--Hb_146673_010 Hb_000413_240 Hb_000413_240 Hb_002946_190--Hb_000413_240 Hb_001472_100 Hb_001472_100 Hb_002946_190--Hb_001472_100 Hb_004041_020--Hb_000413_240 Hb_004041_020--Hb_001863_380 Hb_000429_040 Hb_000429_040 Hb_004041_020--Hb_000429_040 Hb_000599_260 Hb_000599_260 Hb_004041_020--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_004041_020--Hb_012565_070 Hb_002307_180 Hb_002307_180 Hb_000690_190--Hb_002307_180 Hb_000690_190--Hb_000599_260 Hb_007878_010 Hb_007878_010 Hb_000690_190--Hb_007878_010 Hb_161574_020 Hb_161574_020 Hb_000690_190--Hb_161574_020 Hb_002171_060 Hb_002171_060 Hb_000690_190--Hb_002171_060 Hb_001863_380--Hb_000413_240 Hb_002343_040 Hb_002343_040 Hb_001863_380--Hb_002343_040 Hb_001863_380--Hb_012565_070 Hb_000373_050 Hb_000373_050 Hb_001863_380--Hb_000373_050 Hb_002759_190 Hb_002759_190 Hb_001863_380--Hb_002759_190 Hb_000633_020 Hb_000633_020 Hb_146673_010--Hb_000633_020 Hb_002477_300 Hb_002477_300 Hb_146673_010--Hb_002477_300 Hb_000465_090 Hb_000465_090 Hb_146673_010--Hb_000465_090 Hb_003077_020 Hb_003077_020 Hb_146673_010--Hb_003077_020 Hb_000731_160 Hb_000731_160 Hb_146673_010--Hb_000731_160 Hb_000163_100 Hb_000163_100 Hb_000413_240--Hb_000163_100 Hb_000390_090 Hb_000390_090 Hb_000413_240--Hb_000390_090 Hb_000413_060 Hb_000413_060 Hb_000413_240--Hb_000413_060 Hb_000976_120 Hb_000976_120 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_000110_310 Hb_000110_310 Hb_001472_100--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_001472_100--Hb_107879_010 Hb_000270_680 Hb_000270_680 Hb_001472_100--Hb_000270_680 Hb_003207_180 Hb_003207_180 Hb_001472_100--Hb_003207_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6453 9.27719 37.7866 20.6911 14.5813 16.4995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1986 34.4853 15.9993 13.0975 15.1645

CAGE analysis