Hb_002477_300

Information

Type -
Description -
Location Contig2477: 208925-213357
Sequence    

Annotation

kegg
ID rcu:RCOM_0654820
description transcription factor, putative
nr
ID XP_002521373.1
description transcription factor, putative [Ricinus communis]
swissprot
ID F4IEY4
description Telomere repeat-binding factor 5 OS=Arabidopsis thaliana GN=At1g72740 PE=2 SV=1
trembl
ID B9S5V4
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0654820 PE=4 SV=1
Gene Ontology
ID GO:0000786
description telomere repeat-binding factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25814: 209085-210603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_300 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_004449_170 0.0544723817 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
3 Hb_146673_010 0.0656833962 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
4 Hb_000465_090 0.0683649219 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
5 Hb_000731_160 0.0777281077 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
6 Hb_001329_290 0.0876477616 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
7 Hb_001012_010 0.0879135205 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
8 Hb_005588_030 0.0882451762 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
9 Hb_002168_060 0.0914946628 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
10 Hb_000836_170 0.0956080573 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
11 Hb_000633_020 0.0976588258 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
12 Hb_004096_090 0.0986955354 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
13 Hb_007163_070 0.10040325 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
14 Hb_003942_020 0.1005065527 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_001195_480 0.1011763981 - - cop9 complex subunit, putative [Ricinus communis]
16 Hb_000000_360 0.1016808998 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
17 Hb_002338_020 0.1020775063 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
18 Hb_004787_060 0.1021038669 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
19 Hb_002876_240 0.1024964366 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
20 Hb_002687_130 0.1025926055 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002477_300 Hb_002477_300 Hb_004449_170 Hb_004449_170 Hb_002477_300--Hb_004449_170 Hb_146673_010 Hb_146673_010 Hb_002477_300--Hb_146673_010 Hb_000465_090 Hb_000465_090 Hb_002477_300--Hb_000465_090 Hb_000731_160 Hb_000731_160 Hb_002477_300--Hb_000731_160 Hb_001329_290 Hb_001329_290 Hb_002477_300--Hb_001329_290 Hb_001012_010 Hb_001012_010 Hb_002477_300--Hb_001012_010 Hb_004449_170--Hb_001329_290 Hb_005588_030 Hb_005588_030 Hb_004449_170--Hb_005588_030 Hb_004787_060 Hb_004787_060 Hb_004449_170--Hb_004787_060 Hb_001512_060 Hb_001512_060 Hb_004449_170--Hb_001512_060 Hb_000286_070 Hb_000286_070 Hb_004449_170--Hb_000286_070 Hb_000633_020 Hb_000633_020 Hb_146673_010--Hb_000633_020 Hb_146673_010--Hb_000465_090 Hb_002946_190 Hb_002946_190 Hb_146673_010--Hb_002946_190 Hb_003077_020 Hb_003077_020 Hb_146673_010--Hb_003077_020 Hb_146673_010--Hb_000731_160 Hb_000465_090--Hb_001012_010 Hb_009694_010 Hb_009694_010 Hb_000465_090--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_000465_090--Hb_005697_060 Hb_007163_070 Hb_007163_070 Hb_000465_090--Hb_007163_070 Hb_000012_250 Hb_000012_250 Hb_000731_160--Hb_000012_250 Hb_001472_100 Hb_001472_100 Hb_000731_160--Hb_001472_100 Hb_006570_140 Hb_006570_140 Hb_000731_160--Hb_006570_140 Hb_000185_050 Hb_000185_050 Hb_000731_160--Hb_000185_050 Hb_001329_290--Hb_000286_070 Hb_001329_290--Hb_004787_060 Hb_001564_130 Hb_001564_130 Hb_001329_290--Hb_001564_130 Hb_003292_040 Hb_003292_040 Hb_001329_290--Hb_003292_040 Hb_000265_240 Hb_000265_240 Hb_001329_290--Hb_000265_240 Hb_001012_010--Hb_005588_030 Hb_002530_030 Hb_002530_030 Hb_001012_010--Hb_002530_030 Hb_009421_020 Hb_009421_020 Hb_001012_010--Hb_009421_020 Hb_009545_080 Hb_009545_080 Hb_001012_010--Hb_009545_080 Hb_000768_090 Hb_000768_090 Hb_001012_010--Hb_000768_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10285 1.00283 5.0012 1.52693 3.21725 3.19897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.59155 5.41762 2.12112 1.98086 2.30002

CAGE analysis