Hb_000265_240

Information

Type -
Description -
Location Contig265: 268278-271732
Sequence    

Annotation

kegg
ID rcu:RCOM_1211550
description hypothetical protein
nr
ID XP_012084146.1
description PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9P6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15041 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27717: 268269-271726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_240 0.0 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
2 Hb_001329_290 0.0815708839 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
3 Hb_001564_130 0.0987360413 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_004449_170 0.0989503527 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
5 Hb_000377_070 0.1019300869 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 [Jatropha curcas]
6 Hb_030565_080 0.1027522831 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
7 Hb_003292_040 0.1134912162 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
8 Hb_000286_070 0.1139409091 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
9 Hb_002338_060 0.1144085603 - - 2Fe-2S ferredoxin [Glycine soja]
10 Hb_002784_080 0.1155628006 - - PREDICTED: DNA replication complex GINS protein PSF3-like [Jatropha curcas]
11 Hb_002066_070 0.1168095781 - - PREDICTED: uncharacterized protein LOC105631043 [Jatropha curcas]
12 Hb_004787_060 0.1170833943 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
13 Hb_001234_080 0.1176221167 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
14 Hb_011224_060 0.1223548539 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
15 Hb_002154_120 0.1240815734 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
16 Hb_001864_070 0.1248730937 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
17 Hb_021419_020 0.12992165 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
18 Hb_001810_030 0.1299541244 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
19 Hb_005322_040 0.1304230752 - - 60S ribosomal protein L9, putative [Ricinus communis]
20 Hb_000670_020 0.1306137617 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000265_240 Hb_000265_240 Hb_001329_290 Hb_001329_290 Hb_000265_240--Hb_001329_290 Hb_001564_130 Hb_001564_130 Hb_000265_240--Hb_001564_130 Hb_004449_170 Hb_004449_170 Hb_000265_240--Hb_004449_170 Hb_000377_070 Hb_000377_070 Hb_000265_240--Hb_000377_070 Hb_030565_080 Hb_030565_080 Hb_000265_240--Hb_030565_080 Hb_003292_040 Hb_003292_040 Hb_000265_240--Hb_003292_040 Hb_001329_290--Hb_004449_170 Hb_000286_070 Hb_000286_070 Hb_001329_290--Hb_000286_070 Hb_004787_060 Hb_004787_060 Hb_001329_290--Hb_004787_060 Hb_001329_290--Hb_001564_130 Hb_001329_290--Hb_003292_040 Hb_001564_130--Hb_003292_040 Hb_000670_020 Hb_000670_020 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_011970_030 Hb_011970_030 Hb_001564_130--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_001348_070 Hb_001348_070 Hb_001564_130--Hb_001348_070 Hb_002477_300 Hb_002477_300 Hb_004449_170--Hb_002477_300 Hb_005588_030 Hb_005588_030 Hb_004449_170--Hb_005588_030 Hb_004449_170--Hb_004787_060 Hb_004449_170--Hb_001512_060 Hb_004449_170--Hb_000286_070 Hb_005731_050 Hb_005731_050 Hb_000377_070--Hb_005731_050 Hb_002784_080 Hb_002784_080 Hb_000377_070--Hb_002784_080 Hb_002338_060 Hb_002338_060 Hb_000377_070--Hb_002338_060 Hb_001234_080 Hb_001234_080 Hb_000377_070--Hb_001234_080 Hb_001635_180 Hb_001635_180 Hb_000377_070--Hb_001635_180 Hb_000771_080 Hb_000771_080 Hb_030565_080--Hb_000771_080 Hb_001810_030 Hb_001810_030 Hb_030565_080--Hb_001810_030 Hb_000098_190 Hb_000098_190 Hb_030565_080--Hb_000098_190 Hb_097783_020 Hb_097783_020 Hb_030565_080--Hb_097783_020 Hb_003788_050 Hb_003788_050 Hb_030565_080--Hb_003788_050 Hb_003292_040--Hb_011970_030 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.09532 4.72169 12.391 6.62309 18.5978 7.99822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.65593 21.8536 4.57122 5.6844 5.31949

CAGE analysis