Hb_097783_020

Information

Type -
Description -
Location Contig97783: 20272-35545
Sequence    

Annotation

kegg
ID rcu:RCOM_0414400
description hypothetical protein
nr
ID XP_012065220.1
description PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
swissprot
ID Q9CXF4
description TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1
trembl
ID A0A067L611
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20916 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64231: 23231-27603 , PASA_asmbl_64233: 27084-27603 , PASA_asmbl_64235: 27761-27983 , PASA_asmbl_64237: 30050-30509 , PASA_asmbl_64238: 30735-30839 , PASA_asmbl_64240: 31758-32324 , PASA_asmbl_64241: 34961-35186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097783_020 0.0 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
2 Hb_011224_060 0.0815239975 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
3 Hb_000771_080 0.0831149353 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
4 Hb_005618_160 0.085285491 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
5 Hb_003292_040 0.0904150821 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
6 Hb_011970_030 0.092469337 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
7 Hb_000313_300 0.0937509151 - - PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
8 Hb_010368_020 0.09432865 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
9 Hb_000106_130 0.094535187 - - unnamed protein product [Vitis vinifera]
10 Hb_001586_040 0.0950294786 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
11 Hb_001047_100 0.0960600459 - - 40S ribosomal protein S18, putative [Ricinus communis]
12 Hb_105386_010 0.0977569278 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
13 Hb_000174_110 0.0982661538 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
14 Hb_000670_020 0.0999653956 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
15 Hb_003050_200 0.1026417015 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
16 Hb_011848_010 0.1028904872 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
17 Hb_001564_130 0.1041551549 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_009222_010 0.1044718361 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000211_110 0.1046592506 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
20 Hb_000808_250 0.1048847219 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]

Gene co-expression network

sample Hb_097783_020 Hb_097783_020 Hb_011224_060 Hb_011224_060 Hb_097783_020--Hb_011224_060 Hb_000771_080 Hb_000771_080 Hb_097783_020--Hb_000771_080 Hb_005618_160 Hb_005618_160 Hb_097783_020--Hb_005618_160 Hb_003292_040 Hb_003292_040 Hb_097783_020--Hb_003292_040 Hb_011970_030 Hb_011970_030 Hb_097783_020--Hb_011970_030 Hb_000313_300 Hb_000313_300 Hb_097783_020--Hb_000313_300 Hb_004032_430 Hb_004032_430 Hb_011224_060--Hb_004032_430 Hb_003050_200 Hb_003050_200 Hb_011224_060--Hb_003050_200 Hb_011224_060--Hb_003292_040 Hb_011224_060--Hb_011970_030 Hb_003935_020 Hb_003935_020 Hb_011224_060--Hb_003935_020 Hb_010368_020 Hb_010368_020 Hb_000771_080--Hb_010368_020 Hb_001586_040 Hb_001586_040 Hb_000771_080--Hb_001586_040 Hb_001564_130 Hb_001564_130 Hb_000771_080--Hb_001564_130 Hb_000771_080--Hb_005618_160 Hb_000144_100 Hb_000144_100 Hb_000771_080--Hb_000144_100 Hb_000174_110 Hb_000174_110 Hb_005618_160--Hb_000174_110 Hb_054865_100 Hb_054865_100 Hb_005618_160--Hb_054865_100 Hb_005618_160--Hb_011970_030 Hb_000462_140 Hb_000462_140 Hb_005618_160--Hb_000462_140 Hb_003010_030 Hb_003010_030 Hb_005618_160--Hb_003010_030 Hb_002495_040 Hb_002495_040 Hb_005618_160--Hb_002495_040 Hb_003292_040--Hb_001564_130 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150 Hb_011970_030--Hb_002233_150 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_011970_030--Hb_001564_130 Hb_000106_130 Hb_000106_130 Hb_000313_300--Hb_000106_130 Hb_000211_110 Hb_000211_110 Hb_000313_300--Hb_000211_110 Hb_001357_380 Hb_001357_380 Hb_000313_300--Hb_001357_380 Hb_000785_030 Hb_000785_030 Hb_000313_300--Hb_000785_030 Hb_006916_040 Hb_006916_040 Hb_000313_300--Hb_006916_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.59464 1.56855 1.84016 1.68876 4.32395 2.89139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03126 3.45256 0.708029 1.081 0.707889

CAGE analysis