Hb_000211_110

Information

Type -
Description -
Location Contig211: 154117-155743
Sequence    

Annotation

kegg
ID rcu:RCOM_0574500
description U1 small nuclear ribonucleoprotein 70 kD, putative
nr
ID XP_012066184.1
description PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
swissprot
ID Q8VY74
description U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Arabidopsis thaliana GN=SNRNP35 PE=1 SV=1
trembl
ID A0A067L2Z0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23763 PE=4 SV=1
Gene Ontology
ID GO:0000166
description u11 u12 small nuclear ribonucleoprotein 35 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21839: 151853-153657 , PASA_asmbl_21841: 154717-155441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000211_110 0.0 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
2 Hb_001894_030 0.0561668307 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
3 Hb_001357_380 0.0603044155 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000920_280 0.0813362797 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
5 Hb_000640_020 0.0829031335 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
6 Hb_011848_010 0.0842493599 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
7 Hb_000059_140 0.0856083043 - - rnase h, putative [Ricinus communis]
8 Hb_004701_030 0.0866401343 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
9 Hb_004450_060 0.0866616168 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
10 Hb_000106_130 0.0867302668 - - unnamed protein product [Vitis vinifera]
11 Hb_003091_010 0.0874241588 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
12 Hb_023001_020 0.0901082641 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
13 Hb_000617_220 0.0901353168 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
14 Hb_006623_020 0.090410955 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
15 Hb_000358_250 0.0909617751 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
16 Hb_009222_010 0.0927264749 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000313_300 0.0941245153 - - PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
18 Hb_091384_010 0.0946127272 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
19 Hb_004374_150 0.0950166343 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
20 Hb_000640_220 0.0951541023 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]

Gene co-expression network

sample Hb_000211_110 Hb_000211_110 Hb_001894_030 Hb_001894_030 Hb_000211_110--Hb_001894_030 Hb_001357_380 Hb_001357_380 Hb_000211_110--Hb_001357_380 Hb_000920_280 Hb_000920_280 Hb_000211_110--Hb_000920_280 Hb_000640_020 Hb_000640_020 Hb_000211_110--Hb_000640_020 Hb_011848_010 Hb_011848_010 Hb_000211_110--Hb_011848_010 Hb_000059_140 Hb_000059_140 Hb_000211_110--Hb_000059_140 Hb_000617_220 Hb_000617_220 Hb_001894_030--Hb_000617_220 Hb_001894_030--Hb_000640_020 Hb_001894_030--Hb_001357_380 Hb_001894_030--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_001894_030--Hb_004701_030 Hb_001357_380--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_001357_380--Hb_011942_080 Hb_000106_130 Hb_000106_130 Hb_001357_380--Hb_000106_130 Hb_001486_340 Hb_001486_340 Hb_001357_380--Hb_001486_340 Hb_006623_020 Hb_006623_020 Hb_000920_280--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_000920_280--Hb_003091_010 Hb_000923_040 Hb_000923_040 Hb_000920_280--Hb_000923_040 Hb_003142_070 Hb_003142_070 Hb_000920_280--Hb_003142_070 Hb_010968_010 Hb_010968_010 Hb_000920_280--Hb_010968_010 Hb_023020_060 Hb_023020_060 Hb_000640_020--Hb_023020_060 Hb_000343_210 Hb_000343_210 Hb_000640_020--Hb_000343_210 Hb_000504_160 Hb_000504_160 Hb_000640_020--Hb_000504_160 Hb_000104_080 Hb_000104_080 Hb_000640_020--Hb_000104_080 Hb_028707_090 Hb_028707_090 Hb_000640_020--Hb_028707_090 Hb_011848_010--Hb_003091_010 Hb_011848_010--Hb_000617_220 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_004450_060 Hb_004450_060 Hb_011848_010--Hb_004450_060 Hb_000359_330 Hb_000359_330 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_032278_020 Hb_032278_020 Hb_000059_140--Hb_032278_020 Hb_000334_270 Hb_000334_270 Hb_000059_140--Hb_000334_270 Hb_007520_030 Hb_007520_030 Hb_000059_140--Hb_007520_030 Hb_000059_140--Hb_009222_010 Hb_000059_140--Hb_001486_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3847 7.36201 7.42612 4.75617 18.8391 12.6391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.75052 7.51226 2.74797 5.15492 2.29445

CAGE analysis