Hb_003142_070

Information

Type -
Description -
Location Contig3142: 61030-63247
Sequence    

Annotation

kegg
ID tcc:TCM_015378
description hypothetical protein
nr
ID KHG09447.1
description hypothetical protein F383_14657 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0N9W2
description Uncharacterized protein OS=Gossypium arboreum GN=F383_14657 PE=4 SV=1
Gene Ontology
ID GO:0009507
description hypothetical protein F383_14657

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33211: 61125-69390 , PASA_asmbl_33212: 61146-69418 , PASA_asmbl_33213: 61720-69333
cDNA
(Sanger)
(ID:Location)		 012_O05.ab1: 61146-69418 , 034_E16.ab1: 61146-69418 , 048_K11.ab1: 61142-69340 , 053_G03.ab1: 61720-69333

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003142_070 0.0 - - hypothetical protein F383_14657 [Gossypium arboreum]
2 Hb_000359_330 0.0772918564 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006623_020 0.0817266552 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
4 Hb_003091_010 0.0828760503 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
5 Hb_000808_250 0.0834037639 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
6 Hb_001352_090 0.0841341549 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
7 Hb_000920_280 0.0859141838 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
8 Hb_003849_060 0.0870203262 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
9 Hb_000014_170 0.0883359074 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
10 Hb_000368_020 0.0888971734 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
11 Hb_004450_060 0.090286432 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
12 Hb_021422_010 0.0921078355 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
13 Hb_002687_140 0.0922807045 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
14 Hb_000140_330 0.092404171 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
15 Hb_004976_020 0.0971652159 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
16 Hb_007007_050 0.097414868 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
17 Hb_002026_140 0.0976507544 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
18 Hb_000261_250 0.0991319637 - - elongation factor 1-alpha [Lepidium sativum]
19 Hb_011609_050 0.0991807379 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
20 Hb_003467_010 0.1001489845 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003142_070 Hb_003142_070 Hb_000359_330 Hb_000359_330 Hb_003142_070--Hb_000359_330 Hb_006623_020 Hb_006623_020 Hb_003142_070--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_003142_070--Hb_003091_010 Hb_000808_250 Hb_000808_250 Hb_003142_070--Hb_000808_250 Hb_001352_090 Hb_001352_090 Hb_003142_070--Hb_001352_090 Hb_000920_280 Hb_000920_280 Hb_003142_070--Hb_000920_280 Hb_011848_010 Hb_011848_010 Hb_000359_330--Hb_011848_010 Hb_000359_330--Hb_003091_010 Hb_000359_330--Hb_000808_250 Hb_000394_190 Hb_000394_190 Hb_000359_330--Hb_000394_190 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060 Hb_006623_020--Hb_000808_250 Hb_021422_010 Hb_021422_010 Hb_006623_020--Hb_021422_010 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_006623_020--Hb_000920_280 Hb_006623_020--Hb_003091_010 Hb_003091_010--Hb_000617_220 Hb_003091_010--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_003849_060 Hb_003849_060 Hb_000808_250--Hb_003849_060 Hb_000808_250--Hb_021422_010 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_002687_140 Hb_002687_140 Hb_001352_090--Hb_002687_140 Hb_001348_070 Hb_001348_070 Hb_001352_090--Hb_001348_070 Hb_001352_090--Hb_006623_020 Hb_001352_090--Hb_000808_250 Hb_000014_170 Hb_000014_170 Hb_001352_090--Hb_000014_170 Hb_000920_280--Hb_003091_010 Hb_000211_110 Hb_000211_110 Hb_000920_280--Hb_000211_110 Hb_000923_040 Hb_000923_040 Hb_000920_280--Hb_000923_040 Hb_010968_010 Hb_010968_010 Hb_000920_280--Hb_010968_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
170.746 105.02 132.543 36.7152 213.341 151.041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.7062 115.488 55.7994 29.8372 47.1876

CAGE analysis