Hb_000014_170

Information

Type -
Description -
Location Contig14: 340747-342524
Sequence    

Annotation

kegg
ID rcu:RCOM_1309380
description hypothetical protein
nr
ID KDO38238.1
description hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067D625
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0379742mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description cysteine--trna cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000014_170 0.0 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
2 Hb_003142_070 0.0883359074 - - hypothetical protein F383_14657 [Gossypium arboreum]
3 Hb_001352_090 0.0918620892 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
4 Hb_006623_020 0.0959069705 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
5 Hb_003091_010 0.0966216349 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
6 Hb_000072_140 0.100535006 - - -
7 Hb_000107_170 0.1019728951 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
8 Hb_000359_330 0.1032131774 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000808_250 0.1071322222 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
10 Hb_011848_010 0.1076322523 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
11 Hb_004976_020 0.1107608674 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
12 Hb_000920_280 0.1115177821 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
13 Hb_004525_100 0.112066171 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
14 Hb_003126_040 0.112601235 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000617_220 0.1143362098 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_001754_240 0.1175234086 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
17 Hb_002687_140 0.1192254975 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
18 Hb_097783_020 0.1194112902 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
19 Hb_004450_060 0.1195689889 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
20 Hb_000088_200 0.1206831135 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000014_170 Hb_000014_170 Hb_003142_070 Hb_003142_070 Hb_000014_170--Hb_003142_070 Hb_001352_090 Hb_001352_090 Hb_000014_170--Hb_001352_090 Hb_006623_020 Hb_006623_020 Hb_000014_170--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_000014_170--Hb_003091_010 Hb_000072_140 Hb_000072_140 Hb_000014_170--Hb_000072_140 Hb_000107_170 Hb_000107_170 Hb_000014_170--Hb_000107_170 Hb_000359_330 Hb_000359_330 Hb_003142_070--Hb_000359_330 Hb_003142_070--Hb_006623_020 Hb_003142_070--Hb_003091_010 Hb_000808_250 Hb_000808_250 Hb_003142_070--Hb_000808_250 Hb_003142_070--Hb_001352_090 Hb_000920_280 Hb_000920_280 Hb_003142_070--Hb_000920_280 Hb_002687_140 Hb_002687_140 Hb_001352_090--Hb_002687_140 Hb_001348_070 Hb_001348_070 Hb_001352_090--Hb_001348_070 Hb_001352_090--Hb_006623_020 Hb_001352_090--Hb_000808_250 Hb_006623_020--Hb_000808_250 Hb_021422_010 Hb_021422_010 Hb_006623_020--Hb_021422_010 Hb_000617_220 Hb_000617_220 Hb_006623_020--Hb_000617_220 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_006623_020--Hb_000920_280 Hb_006623_020--Hb_003091_010 Hb_003091_010--Hb_000617_220 Hb_011848_010 Hb_011848_010 Hb_003091_010--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_000088_200 Hb_000088_200 Hb_000072_140--Hb_000088_200 Hb_000072_140--Hb_000617_220 Hb_000072_140--Hb_011848_010 Hb_004044_020 Hb_004044_020 Hb_000072_140--Hb_004044_020 Hb_000072_140--Hb_003091_010 Hb_004525_100 Hb_004525_100 Hb_000072_140--Hb_004525_100 Hb_000107_170--Hb_003091_010 Hb_000107_170--Hb_000359_330 Hb_001474_030 Hb_001474_030 Hb_000107_170--Hb_001474_030 Hb_000107_170--Hb_000617_220 Hb_001754_170 Hb_001754_170 Hb_000107_170--Hb_001754_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.0006 31.7675 43.5381 14.811 92.6674 63.3533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8043 62.1807 12.8247 9.55444 16.1778

CAGE analysis