Hb_000107_170

Information

Type -
Description -
Location Contig107: 128243-130129
Sequence    

Annotation

kegg
ID rcu:RCOM_0820860
description expressed protein, putative
nr
ID XP_012082641.1
description PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
swissprot
ID Q9Y805
description Pre-mRNA-splicing factor cwf25 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf25 PE=1 SV=1
trembl
ID A0A067K1M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19521 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02153: 128043-128557 , PASA_asmbl_02154: 129758-132093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_170 0.0 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
2 Hb_003091_010 0.0856804012 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
3 Hb_000359_330 0.0944228792 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001474_030 0.0949007854 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
5 Hb_000014_170 0.1019728951 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
6 Hb_000617_220 0.1084421524 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
7 Hb_001754_170 0.1090747514 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
8 Hb_011848_010 0.1103964764 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
9 Hb_003142_070 0.1104259961 - - hypothetical protein F383_14657 [Gossypium arboreum]
10 Hb_004374_150 0.1134455986 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
11 Hb_000920_280 0.1144280377 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
12 Hb_004109_060 0.1145958807 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
13 Hb_033095_020 0.1163250225 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000236_280 0.1178461434 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
15 Hb_000072_140 0.1180865566 - - -
16 Hb_000787_170 0.1192106068 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
17 Hb_001910_020 0.1207870811 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
18 Hb_156144_030 0.1228030493 - - hypothetical protein RCOM_0187400 [Ricinus communis]
19 Hb_000394_190 0.1241497424 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
20 Hb_004701_030 0.124242375 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]

Gene co-expression network

sample Hb_000107_170 Hb_000107_170 Hb_003091_010 Hb_003091_010 Hb_000107_170--Hb_003091_010 Hb_000359_330 Hb_000359_330 Hb_000107_170--Hb_000359_330 Hb_001474_030 Hb_001474_030 Hb_000107_170--Hb_001474_030 Hb_000014_170 Hb_000014_170 Hb_000107_170--Hb_000014_170 Hb_000617_220 Hb_000617_220 Hb_000107_170--Hb_000617_220 Hb_001754_170 Hb_001754_170 Hb_000107_170--Hb_001754_170 Hb_003091_010--Hb_000617_220 Hb_011848_010 Hb_011848_010 Hb_003091_010--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_000359_330--Hb_011848_010 Hb_000808_250 Hb_000808_250 Hb_000359_330--Hb_000808_250 Hb_000394_190 Hb_000394_190 Hb_000359_330--Hb_000394_190 Hb_006623_020 Hb_006623_020 Hb_000359_330--Hb_006623_020 Hb_000359_330--Hb_004450_060 Hb_002276_050 Hb_002276_050 Hb_001474_030--Hb_002276_050 Hb_000740_070 Hb_000740_070 Hb_001474_030--Hb_000740_070 Hb_073171_080 Hb_073171_080 Hb_001474_030--Hb_073171_080 Hb_000236_280 Hb_000236_280 Hb_001474_030--Hb_000236_280 Hb_002133_030 Hb_002133_030 Hb_001474_030--Hb_002133_030 Hb_001396_290 Hb_001396_290 Hb_001474_030--Hb_001396_290 Hb_003142_070 Hb_003142_070 Hb_000014_170--Hb_003142_070 Hb_001352_090 Hb_001352_090 Hb_000014_170--Hb_001352_090 Hb_000014_170--Hb_006623_020 Hb_000014_170--Hb_003091_010 Hb_000072_140 Hb_000072_140 Hb_000014_170--Hb_000072_140 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_000617_220--Hb_006623_020 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_007534_040 Hb_007534_040 Hb_001754_170--Hb_007534_040 Hb_004374_150 Hb_004374_150 Hb_001754_170--Hb_004374_150 Hb_000236_300 Hb_000236_300 Hb_001754_170--Hb_000236_300 Hb_175612_010 Hb_175612_010 Hb_001754_170--Hb_175612_010 Hb_001754_170--Hb_000617_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.37511 6.22055 3.74232 2.68973 11.1141 8.67456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55907 5.81709 1.85379 0.871948 1.418

CAGE analysis