Hb_001894_030

Information

Type -
Description -
Location Contig1894: 36025-38766
Sequence    

Annotation

kegg
ID tcc:TCM_010354
description Nucleic acid-binding, OB-fold-like protein
nr
ID XP_007044641.1
description Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
swissprot
ID O49453
description Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1
trembl
ID A0A061E750
description Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_010354 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nucleic acid- ob-fold-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18802: 36025-38759 , PASA_asmbl_18803: 38341-38565
cDNA
(Sanger)
(ID:Location)		 003_B18.ab1: 36164-38703 , 013_L02.ab1: 36279-38759 , 016_B02.ab1: 36216-38703 , 025_J06.ab1: 36190-38697 , 025_N05.ab1: 36153-38697 , 032_J04.ab1: 36153-38702 , 042_B07.ab1: 36290-38759

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_030 0.0 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
2 Hb_000211_110 0.0561668307 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
3 Hb_000617_220 0.0682228476 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
4 Hb_000640_020 0.0715026641 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
5 Hb_001357_380 0.0733525537 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_011848_010 0.0767786753 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
7 Hb_004701_030 0.0796153086 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
8 Hb_003091_010 0.0797600845 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
9 Hb_023001_020 0.0828029166 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
10 Hb_000640_220 0.085788779 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
11 Hb_000106_130 0.0889128621 - - unnamed protein product [Vitis vinifera]
12 Hb_023020_060 0.0893993053 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
13 Hb_000785_030 0.0896055954 - - hypothetical protein RCOM_0808030 [Ricinus communis]
14 Hb_004450_060 0.0904658027 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
15 Hb_000104_080 0.090848042 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
16 Hb_009222_010 0.0928125484 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000059_140 0.093487849 - - rnase h, putative [Ricinus communis]
18 Hb_000359_330 0.0937098598 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000392_050 0.0939598067 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
20 Hb_000920_280 0.0944654286 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]

Gene co-expression network

sample Hb_001894_030 Hb_001894_030 Hb_000211_110 Hb_000211_110 Hb_001894_030--Hb_000211_110 Hb_000617_220 Hb_000617_220 Hb_001894_030--Hb_000617_220 Hb_000640_020 Hb_000640_020 Hb_001894_030--Hb_000640_020 Hb_001357_380 Hb_001357_380 Hb_001894_030--Hb_001357_380 Hb_011848_010 Hb_011848_010 Hb_001894_030--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_001894_030--Hb_004701_030 Hb_000211_110--Hb_001357_380 Hb_000920_280 Hb_000920_280 Hb_000211_110--Hb_000920_280 Hb_000211_110--Hb_000640_020 Hb_000211_110--Hb_011848_010 Hb_000059_140 Hb_000059_140 Hb_000211_110--Hb_000059_140 Hb_003091_010 Hb_003091_010 Hb_000617_220--Hb_003091_010 Hb_000617_220--Hb_011848_010 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_023020_060 Hb_023020_060 Hb_000640_020--Hb_023020_060 Hb_000343_210 Hb_000343_210 Hb_000640_020--Hb_000343_210 Hb_000504_160 Hb_000504_160 Hb_000640_020--Hb_000504_160 Hb_000104_080 Hb_000104_080 Hb_000640_020--Hb_000104_080 Hb_028707_090 Hb_028707_090 Hb_000640_020--Hb_028707_090 Hb_001357_380--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_001357_380--Hb_011942_080 Hb_000106_130 Hb_000106_130 Hb_001357_380--Hb_000106_130 Hb_001486_340 Hb_001486_340 Hb_001357_380--Hb_001486_340 Hb_011848_010--Hb_003091_010 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_004450_060 Hb_004450_060 Hb_011848_010--Hb_004450_060 Hb_000359_330 Hb_000359_330 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_023001_020 Hb_023001_020 Hb_004701_030--Hb_023001_020 Hb_004656_060 Hb_004656_060 Hb_004701_030--Hb_004656_060 Hb_004701_030--Hb_003091_010 Hb_004678_020 Hb_004678_020 Hb_004701_030--Hb_004678_020 Hb_005895_040 Hb_005895_040 Hb_004701_030--Hb_005895_040 Hb_004701_030--Hb_000104_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
302.909 157.455 154.014 126.179 387.9 300.348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.527 151.242 88.7513 115.959 33.308

CAGE analysis