Hb_000343_210

Information

Type -
Description -
Location Contig343: 180918-182213
Sequence    

Annotation

kegg
ID rcu:RCOM_0980270
description ran-binding protein, putative
nr
ID XP_002528188.1
description ran-binding protein, putative [Ricinus communis]
swissprot
ID Q9C829
description Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana GN=NUP50A PE=1 SV=1
trembl
ID B9SQB9
description Ran-binding protein, putative OS=Ricinus communis GN=RCOM_0980270 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup50a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35852: 179481-182581
cDNA
(Sanger)
(ID:Location)		 015_I01.ab1: 179481-181516 , 025_I15.ab1: 179481-181623

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_210 0.0 - - ran-binding protein, putative [Ricinus communis]
2 Hb_147737_010 0.0541586241 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
3 Hb_002675_040 0.0600378845 - - ran-binding protein, putative [Ricinus communis]
4 Hb_000035_040 0.0612369784 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
5 Hb_000331_190 0.0615326519 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
6 Hb_000531_090 0.0617741579 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
7 Hb_003020_110 0.0631779964 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
8 Hb_023020_060 0.0651636031 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
9 Hb_003656_160 0.0676168016 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
10 Hb_000329_130 0.0676662731 - - beta-tubulin cofactor d, putative [Ricinus communis]
11 Hb_000424_010 0.0684696641 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
12 Hb_000640_320 0.0691492024 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
13 Hb_002652_040 0.0694129787 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
14 Hb_004678_060 0.0697301681 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
15 Hb_000504_160 0.0705505556 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
16 Hb_003581_120 0.0722334658 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
17 Hb_002400_180 0.072597904 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000417_160 0.073760792 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
19 Hb_033594_020 0.0740628668 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
20 Hb_000640_020 0.0745062551 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]

Gene co-expression network

sample Hb_000343_210 Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_003020_110 Hb_003020_110 Hb_000343_210--Hb_003020_110 Hb_000329_130 Hb_000329_130 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000567_010 Hb_000567_010 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130 Hb_147737_010--Hb_000531_090 Hb_033594_020 Hb_033594_020 Hb_002675_040--Hb_033594_020 Hb_017895_020 Hb_017895_020 Hb_002675_040--Hb_017895_020 Hb_001900_120 Hb_001900_120 Hb_002675_040--Hb_001900_120 Hb_002675_040--Hb_000329_130 Hb_008725_130 Hb_008725_130 Hb_002675_040--Hb_008725_130 Hb_002652_040 Hb_002652_040 Hb_000035_040--Hb_002652_040 Hb_000424_010 Hb_000424_010 Hb_000035_040--Hb_000424_010 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_000035_040--Hb_000331_190 Hb_000035_040--Hb_000531_090 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_000331_190--Hb_002652_040 Hb_125092_020 Hb_125092_020 Hb_000331_190--Hb_125092_020 Hb_024990_010 Hb_024990_010 Hb_000331_190--Hb_024990_010 Hb_000331_190--Hb_000567_010 Hb_000340_160 Hb_000340_160 Hb_000331_190--Hb_000340_160 Hb_000531_090--Hb_125092_020 Hb_002893_150 Hb_002893_150 Hb_000531_090--Hb_002893_150 Hb_000789_080 Hb_000789_080 Hb_000531_090--Hb_000789_080 Hb_164010_060 Hb_164010_060 Hb_003020_110--Hb_164010_060 Hb_000342_110 Hb_000342_110 Hb_003020_110--Hb_000342_110 Hb_003581_120 Hb_003581_120 Hb_003020_110--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_003020_110--Hb_002400_180 Hb_031042_070 Hb_031042_070 Hb_003020_110--Hb_031042_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
151.085 82.0056 43.7205 37.705 133.104 136.958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.3895 39.4088 43.8908 48.6244 34.1372

CAGE analysis