Hb_000342_110

Information

Type -
Description -
Location Contig342: 119595-124867
Sequence    

Annotation

kegg
ID rcu:RCOM_0798390
description hypothetical protein
nr
ID XP_012077322.1
description PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
swissprot
ID Q6DJG6
description BRISC and BRCA1-A complex member 1 OS=Xenopus laevis GN=babam1 PE=2 SV=1
trembl
ID A0A067KDB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07693 PE=4 SV=1
Gene Ontology
ID GO:0070531
description brisc and brca1-a complex member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35744: 118162-118940 , PASA_asmbl_35746: 119625-124736
cDNA
(Sanger)
(ID:Location)		 040_N12.ab1: 119416-120005 , 046_A18.ab1: 119416-120005 , 052_F04.ab1: 119416-120005

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_110 0.0 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
2 Hb_003020_110 0.0653301094 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
3 Hb_002007_350 0.0809745648 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
4 Hb_005245_130 0.0829203982 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
5 Hb_001541_260 0.082962786 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
6 Hb_011942_080 0.0851143474 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
7 Hb_000139_250 0.0861643143 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
8 Hb_023001_020 0.08638549 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
9 Hb_000224_060 0.0881487654 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
10 Hb_000879_140 0.0884109459 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
11 Hb_000645_150 0.0884720247 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000699_130 0.0896316128 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000236_320 0.0908071393 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
14 Hb_000236_100 0.0936448321 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
15 Hb_007590_080 0.0939444764 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
16 Hb_007520_030 0.094135954 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
17 Hb_007632_020 0.0947738764 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
18 Hb_000406_240 0.0949066584 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
19 Hb_012305_070 0.0961563908 - - conserved hypothetical protein [Ricinus communis]
20 Hb_185679_010 0.0963391219 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000342_110 Hb_000342_110 Hb_003020_110 Hb_003020_110 Hb_000342_110--Hb_003020_110 Hb_002007_350 Hb_002007_350 Hb_000342_110--Hb_002007_350 Hb_005245_130 Hb_005245_130 Hb_000342_110--Hb_005245_130 Hb_001541_260 Hb_001541_260 Hb_000342_110--Hb_001541_260 Hb_011942_080 Hb_011942_080 Hb_000342_110--Hb_011942_080 Hb_000139_250 Hb_000139_250 Hb_000342_110--Hb_000139_250 Hb_000343_210 Hb_000343_210 Hb_003020_110--Hb_000343_210 Hb_164010_060 Hb_164010_060 Hb_003020_110--Hb_164010_060 Hb_003581_120 Hb_003581_120 Hb_003020_110--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_003020_110--Hb_002400_180 Hb_031042_070 Hb_031042_070 Hb_003020_110--Hb_031042_070 Hb_009265_080 Hb_009265_080 Hb_002007_350--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_002007_350--Hb_008253_010 Hb_004678_060 Hb_004678_060 Hb_002007_350--Hb_004678_060 Hb_007590_080 Hb_007590_080 Hb_002007_350--Hb_007590_080 Hb_000803_300 Hb_000803_300 Hb_002007_350--Hb_000803_300 Hb_003656_160 Hb_003656_160 Hb_002007_350--Hb_003656_160 Hb_004934_090 Hb_004934_090 Hb_005245_130--Hb_004934_090 Hb_003406_010 Hb_003406_010 Hb_005245_130--Hb_003406_010 Hb_005245_130--Hb_000803_300 Hb_004096_030 Hb_004096_030 Hb_005245_130--Hb_004096_030 Hb_005276_210 Hb_005276_210 Hb_005245_130--Hb_005276_210 Hb_031939_010 Hb_031939_010 Hb_005245_130--Hb_031939_010 Hb_144787_030 Hb_144787_030 Hb_001541_260--Hb_144787_030 Hb_000236_100 Hb_000236_100 Hb_001541_260--Hb_000236_100 Hb_001541_260--Hb_000139_250 Hb_000465_470 Hb_000465_470 Hb_001541_260--Hb_000465_470 Hb_000032_490 Hb_000032_490 Hb_001541_260--Hb_000032_490 Hb_000946_120 Hb_000946_120 Hb_001541_260--Hb_000946_120 Hb_011942_080--Hb_031939_010 Hb_003467_010 Hb_003467_010 Hb_011942_080--Hb_003467_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_002942_220 Hb_002942_220 Hb_000139_250--Hb_002942_220 Hb_023001_020 Hb_023001_020 Hb_000139_250--Hb_023001_020 Hb_000424_010 Hb_000424_010 Hb_000139_250--Hb_000424_010 Hb_012654_010 Hb_012654_010 Hb_000139_250--Hb_012654_010 Hb_000139_250--Hb_000803_300 Hb_000139_250--Hb_144787_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.072 66.3809 36.7008 19.923 105.76 79.1525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.3374 50.7379 39.2072 46.0609 17.9499

CAGE analysis