Hb_000976_320

Information

Type -
Description -
Location Contig976: 245732-262757
Sequence    

Annotation

kegg
ID rcu:RCOM_1576590
description Selenoprotein O, putative
nr
ID XP_010087379.1
description UPF0061 protein azo1574 [Morus notabilis]
swissprot
ID Q9SXP7
description Octanoyltransferase OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1
trembl
ID W9QD90
description UPF0061 protein azo1574 OS=Morus notabilis GN=L484_018405 PE=3 SV=1
Gene Ontology
ID GO:0005737
description selenoprotein o

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_320 0.0 - - UPF0061 protein azo1574 [Morus notabilis]
2 Hb_106552_050 0.0631374649 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
3 Hb_011942_080 0.0669345002 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
4 Hb_008864_110 0.0701849779 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
5 Hb_000768_110 0.0710700637 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
6 Hb_000322_100 0.0722601072 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
7 Hb_001677_210 0.0735038538 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
8 Hb_005532_050 0.0757992484 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_000803_110 0.0769906925 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
10 Hb_008803_090 0.0798806739 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
11 Hb_031939_010 0.0807936052 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
12 Hb_000521_260 0.0818255527 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
13 Hb_010193_050 0.0824585288 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009265_080 0.0827080014 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
15 Hb_000179_030 0.0832569673 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
16 Hb_002301_220 0.0833492402 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
17 Hb_000173_510 0.0833563304 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
18 Hb_009222_010 0.0835726429 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_003044_100 0.0845924715 - - hypothetical protein F383_08446 [Gossypium arboreum]
20 Hb_011848_010 0.0860868895 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_320 Hb_000976_320 Hb_106552_050 Hb_106552_050 Hb_000976_320--Hb_106552_050 Hb_011942_080 Hb_011942_080 Hb_000976_320--Hb_011942_080 Hb_008864_110 Hb_008864_110 Hb_000976_320--Hb_008864_110 Hb_000768_110 Hb_000768_110 Hb_000976_320--Hb_000768_110 Hb_000322_100 Hb_000322_100 Hb_000976_320--Hb_000322_100 Hb_001677_210 Hb_001677_210 Hb_000976_320--Hb_001677_210 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_003467_010 Hb_003467_010 Hb_011942_080--Hb_003467_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_003605_130 Hb_003605_130 Hb_008864_110--Hb_003605_130 Hb_002400_470 Hb_002400_470 Hb_008864_110--Hb_002400_470 Hb_000645_120 Hb_000645_120 Hb_008864_110--Hb_000645_120 Hb_000123_090 Hb_000123_090 Hb_008864_110--Hb_000123_090 Hb_001047_030 Hb_001047_030 Hb_008864_110--Hb_001047_030 Hb_000538_100 Hb_000538_100 Hb_008864_110--Hb_000538_100 Hb_000567_010 Hb_000567_010 Hb_000768_110--Hb_000567_010 Hb_008159_020 Hb_008159_020 Hb_000768_110--Hb_008159_020 Hb_000160_040 Hb_000160_040 Hb_000768_110--Hb_000160_040 Hb_010193_050 Hb_010193_050 Hb_000768_110--Hb_010193_050 Hb_005914_060 Hb_005914_060 Hb_000768_110--Hb_005914_060 Hb_000173_510 Hb_000173_510 Hb_000768_110--Hb_000173_510 Hb_000034_050 Hb_000034_050 Hb_000322_100--Hb_000034_050 Hb_008695_120 Hb_008695_120 Hb_000322_100--Hb_008695_120 Hb_000322_100--Hb_007336_020 Hb_000322_100--Hb_008864_110 Hb_031091_010 Hb_031091_010 Hb_000322_100--Hb_031091_010 Hb_006951_020 Hb_006951_020 Hb_000322_100--Hb_006951_020 Hb_000808_270 Hb_000808_270 Hb_001677_210--Hb_000808_270 Hb_003766_040 Hb_003766_040 Hb_001677_210--Hb_003766_040 Hb_000629_010 Hb_000629_010 Hb_001677_210--Hb_000629_010 Hb_006185_050 Hb_006185_050 Hb_001677_210--Hb_006185_050 Hb_001677_210--Hb_008803_090 Hb_000926_280 Hb_000926_280 Hb_001677_210--Hb_000926_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44194 2.27036 2.00468 1.5998 4.14562 4.98882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11666 2.57417 2.27198 1.8158 0.894352

CAGE analysis