Hb_012799_110

Information

Type -
Description -
Location Contig12799: 54129-58262
Sequence    

Annotation

kegg
ID rcu:RCOM_1496400
description pre-mRNA cleavage factor im, 25kD subunit, putative
nr
ID XP_002510802.1
description pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
swissprot
ID Q8GXS3
description Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1
trembl
ID B9R9C7
description Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_1496400 PE=4 SV=1
Gene Ontology
ID GO:0005849
description pre-mrna cleavage factor im 25 kda subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08638: 54093-58262
cDNA
(Sanger)
(ID:Location)		 025_H11.ab1: 54334-58269

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_110 0.0 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
2 Hb_011942_080 0.0708138261 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
3 Hb_000394_190 0.0715814365 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_003849_060 0.0774818277 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
5 Hb_011848_010 0.0809007733 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
6 Hb_033095_020 0.0813951003 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003467_010 0.0819258298 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
8 Hb_000803_110 0.0822114165 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
9 Hb_007643_050 0.0850294589 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_001014_050 0.0884884452 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
11 Hb_000116_110 0.0887085998 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
12 Hb_086639_070 0.0890147809 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
13 Hb_031939_010 0.0899861347 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_001142_050 0.0903921777 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
15 Hb_000244_300 0.0923877137 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
16 Hb_142439_010 0.0929968869 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
17 Hb_070739_010 0.093097386 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
18 Hb_031091_010 0.0949046129 - - crooked neck protein, putative [Ricinus communis]
19 Hb_000189_340 0.0958994303 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
20 Hb_003091_010 0.0963107536 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]

Gene co-expression network

sample Hb_012799_110 Hb_012799_110 Hb_011942_080 Hb_011942_080 Hb_012799_110--Hb_011942_080 Hb_000394_190 Hb_000394_190 Hb_012799_110--Hb_000394_190 Hb_003849_060 Hb_003849_060 Hb_012799_110--Hb_003849_060 Hb_011848_010 Hb_011848_010 Hb_012799_110--Hb_011848_010 Hb_033095_020 Hb_033095_020 Hb_012799_110--Hb_033095_020 Hb_003467_010 Hb_003467_010 Hb_012799_110--Hb_003467_010 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_011942_080--Hb_003467_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000787_170 Hb_000787_170 Hb_000394_190--Hb_000787_170 Hb_000394_190--Hb_003467_010 Hb_000394_190--Hb_033095_020 Hb_000808_250 Hb_000808_250 Hb_003849_060--Hb_000808_250 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003849_060--Hb_003467_010 Hb_003849_060--Hb_011848_010 Hb_003849_060--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_003849_060--Hb_002192_080 Hb_003091_010 Hb_003091_010 Hb_011848_010--Hb_003091_010 Hb_000617_220 Hb_000617_220 Hb_011848_010--Hb_000617_220 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_004450_060 Hb_004450_060 Hb_011848_010--Hb_004450_060 Hb_000359_330 Hb_000359_330 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_000140_080 Hb_000140_080 Hb_033095_020--Hb_000140_080 Hb_001168_040 Hb_001168_040 Hb_033095_020--Hb_001168_040 Hb_008511_030 Hb_008511_030 Hb_033095_020--Hb_008511_030 Hb_002025_110 Hb_002025_110 Hb_033095_020--Hb_002025_110 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.386 110.047 85.8359 39.8704 151.49 196.005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
118.335 124.658 61.6476 38.9819 33.4029

CAGE analysis