Hb_000261_250

Information

Type -
Description -
Location Contig261: 206970-219090
Sequence    

Annotation

kegg
ID mtr:MTR_7g098190
description Elongation factor 1-alpha
nr
ID AEI28157.1
description elongation factor 1-alpha [Lepidium sativum]
swissprot
ID Q9HLA7
description Translation initiation factor 2 subunit gamma OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=eif2g PE=3 SV=1
trembl
ID G8Z925
description Elongation factor 1-alpha (Fragment) OS=Lepidium sativum GN=EF1a PE=2 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27279: 206363-256628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_250 0.0 - - elongation factor 1-alpha [Lepidium sativum]
2 Hb_000394_190 0.0547159001 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_002192_080 0.0652085271 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
4 Hb_001142_050 0.0734808557 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
5 Hb_000359_330 0.0774422733 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003849_060 0.0816782405 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
7 Hb_106552_050 0.083869415 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
8 Hb_000959_270 0.0850227214 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
9 Hb_000808_250 0.0853885544 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
10 Hb_003467_010 0.0880435005 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
11 Hb_000787_170 0.088228304 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
12 Hb_032208_040 0.0884214096 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
13 Hb_011848_010 0.0885110406 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
14 Hb_002043_090 0.0900997519 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
15 Hb_004450_060 0.0905727597 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
16 Hb_000976_260 0.0917326132 - - -
17 Hb_000803_110 0.0922541482 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
18 Hb_058972_010 0.0922670879 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
19 Hb_000368_020 0.0928472122 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
20 Hb_000926_310 0.0931280096 - - uncharacterized protein LOC100500241 [Glycine max]

Gene co-expression network

sample Hb_000261_250 Hb_000261_250 Hb_000394_190 Hb_000394_190 Hb_000261_250--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_000261_250--Hb_002192_080 Hb_001142_050 Hb_001142_050 Hb_000261_250--Hb_001142_050 Hb_000359_330 Hb_000359_330 Hb_000261_250--Hb_000359_330 Hb_003849_060 Hb_003849_060 Hb_000261_250--Hb_003849_060 Hb_106552_050 Hb_106552_050 Hb_000261_250--Hb_106552_050 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000787_170 Hb_000787_170 Hb_000394_190--Hb_000787_170 Hb_003467_010 Hb_003467_010 Hb_000394_190--Hb_003467_010 Hb_012799_110 Hb_012799_110 Hb_000394_190--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000394_190--Hb_033095_020 Hb_012389_020 Hb_012389_020 Hb_002192_080--Hb_012389_020 Hb_002192_080--Hb_106552_050 Hb_000107_190 Hb_000107_190 Hb_002192_080--Hb_000107_190 Hb_002192_080--Hb_003849_060 Hb_032920_060 Hb_032920_060 Hb_002192_080--Hb_032920_060 Hb_000012_020 Hb_000012_020 Hb_001142_050--Hb_000012_020 Hb_000976_260 Hb_000976_260 Hb_001142_050--Hb_000976_260 Hb_011848_010 Hb_011848_010 Hb_001142_050--Hb_011848_010 Hb_009222_010 Hb_009222_010 Hb_001142_050--Hb_009222_010 Hb_001142_050--Hb_003467_010 Hb_000359_330--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000359_330--Hb_003091_010 Hb_000808_250 Hb_000808_250 Hb_000359_330--Hb_000808_250 Hb_000359_330--Hb_000394_190 Hb_006623_020 Hb_006623_020 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060 Hb_003849_060--Hb_000808_250 Hb_000334_270 Hb_000334_270 Hb_003849_060--Hb_000334_270 Hb_003849_060--Hb_003467_010 Hb_003849_060--Hb_011848_010 Hb_003849_060--Hb_000394_190 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_106552_050--Hb_000808_250 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2985 18.6738 22.9745 8.8008 24.0943 29.388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4984 21.8757 10.1654 8.73056 6.34514

CAGE analysis