Hb_000012_020

Information

Type transcription factor
Description TF Family: C3H
Location Contig12: 77328-78515
Sequence    

Annotation

kegg
ID pop:POPTR_0018s04720g
description POPTRDRAFT_736814; hypothetical protein
nr
ID XP_012077337.1
description PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
swissprot
ID Q9M0G2
description Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1
trembl
ID A0A067KDD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07708 PE=4 SV=1
Gene Ontology
ID GO:0005737
description zinc finger c-x8-c-x5-c-x3-h type family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 002_K06.ab1: 77378-78117 , 004_D22.ab1: 77378-78123 , 051_D17.ab1: 77388-77823

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_020 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
2 Hb_001142_050 0.0656389253 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
3 Hb_003044_100 0.0758867191 - - hypothetical protein F383_08446 [Gossypium arboreum]
4 Hb_000976_260 0.0853580042 - - -
5 Hb_000290_020 0.0879257547 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
6 Hb_002639_150 0.0962321321 - - -
7 Hb_000156_140 0.0998364186 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
8 Hb_000808_250 0.101662382 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
9 Hb_003091_010 0.1022314549 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
10 Hb_011848_010 0.1024580332 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
11 Hb_010968_010 0.1032157745 - - Golgi snare 12 isoform 1 [Theobroma cacao]
12 Hb_027043_020 0.1061590255 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012092_010 0.1067844336 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
14 Hb_006623_020 0.1072952173 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
15 Hb_000666_110 0.1076487649 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
16 Hb_000617_220 0.1079214225 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
17 Hb_000676_050 0.1084539661 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
18 Hb_000392_050 0.1087671177 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
19 Hb_065953_010 0.1088074521 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
20 Hb_003050_200 0.1098289738 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]

Gene co-expression network

sample Hb_000012_020 Hb_000012_020 Hb_001142_050 Hb_001142_050 Hb_000012_020--Hb_001142_050 Hb_003044_100 Hb_003044_100 Hb_000012_020--Hb_003044_100 Hb_000976_260 Hb_000976_260 Hb_000012_020--Hb_000976_260 Hb_000290_020 Hb_000290_020 Hb_000012_020--Hb_000290_020 Hb_002639_150 Hb_002639_150 Hb_000012_020--Hb_002639_150 Hb_000156_140 Hb_000156_140 Hb_000012_020--Hb_000156_140 Hb_001142_050--Hb_000976_260 Hb_011848_010 Hb_011848_010 Hb_001142_050--Hb_011848_010 Hb_000261_250 Hb_000261_250 Hb_001142_050--Hb_000261_250 Hb_009222_010 Hb_009222_010 Hb_001142_050--Hb_009222_010 Hb_003467_010 Hb_003467_010 Hb_001142_050--Hb_003467_010 Hb_031939_010 Hb_031939_010 Hb_003044_100--Hb_031939_010 Hb_007026_030 Hb_007026_030 Hb_003044_100--Hb_007026_030 Hb_003044_100--Hb_000290_020 Hb_004198_010 Hb_004198_010 Hb_003044_100--Hb_004198_010 Hb_006064_010 Hb_006064_010 Hb_003044_100--Hb_006064_010 Hb_004363_010 Hb_004363_010 Hb_000976_260--Hb_004363_010 Hb_000976_260--Hb_000261_250 Hb_000661_140 Hb_000661_140 Hb_000976_260--Hb_000661_140 Hb_000976_260--Hb_002639_150 Hb_000290_020--Hb_031939_010 Hb_001047_100 Hb_001047_100 Hb_000290_020--Hb_001047_100 Hb_000290_020--Hb_011848_010 Hb_008887_050 Hb_008887_050 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220 Hb_002639_150--Hb_000661_140 Hb_000926_310 Hb_000926_310 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_009411_020 Hb_009411_020 Hb_000156_140--Hb_009411_020 Hb_002774_070 Hb_002774_070 Hb_000156_140--Hb_002774_070 Hb_000165_030 Hb_000165_030 Hb_000156_140--Hb_000165_030 Hb_000175_390 Hb_000175_390 Hb_000156_140--Hb_000175_390 Hb_004204_200 Hb_004204_200 Hb_000156_140--Hb_004204_200 Hb_000997_020 Hb_000997_020 Hb_000156_140--Hb_000997_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.264 28.5216 88.1743 37.1621 103.625 126.364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.2786 73.8369 45.6416 25.4814 16.3679

CAGE analysis