Hb_000617_220

Information

Type -
Description -
Location Contig617: 174619-177398
Sequence    

Annotation

kegg
ID vvi:100245039
description 60S ribosomal protein L7-2
nr
ID XP_012074809.1
description PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
swissprot
ID P60040
description 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=2 SV=1
trembl
ID A0A067KHB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08960 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l7-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51289: 174731-174948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_220 0.0 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
2 Hb_003091_010 0.0517206629 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
3 Hb_011848_010 0.0574608636 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
4 Hb_001894_030 0.0682228476 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
5 Hb_006623_020 0.0722149019 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
6 Hb_000072_140 0.0740438976 - - -
7 Hb_000290_020 0.0765183589 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
8 Hb_004525_100 0.0770707189 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
9 Hb_000088_200 0.0797017696 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
10 Hb_000359_330 0.0799406464 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001754_240 0.0799949331 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
12 Hb_004450_060 0.0802194938 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
13 Hb_000236_280 0.0822928301 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
14 Hb_004044_020 0.0837493094 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
15 Hb_004701_030 0.0864101471 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
16 Hb_000808_250 0.0882213154 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
17 Hb_000211_110 0.0901353168 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
18 Hb_000920_280 0.0912263475 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
19 Hb_175612_010 0.0921287327 transcription factor TF Family: MBF1 orf [Ricinus communis]
20 Hb_178968_100 0.0921990115 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000617_220 Hb_000617_220 Hb_003091_010 Hb_003091_010 Hb_000617_220--Hb_003091_010 Hb_011848_010 Hb_011848_010 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_003091_010--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_000359_330 Hb_000359_330 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_011848_010--Hb_004450_060 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_000211_110 Hb_000211_110 Hb_001894_030--Hb_000211_110 Hb_000640_020 Hb_000640_020 Hb_001894_030--Hb_000640_020 Hb_001357_380 Hb_001357_380 Hb_001894_030--Hb_001357_380 Hb_001894_030--Hb_011848_010 Hb_001894_030--Hb_004701_030 Hb_000808_250 Hb_000808_250 Hb_006623_020--Hb_000808_250 Hb_021422_010 Hb_021422_010 Hb_006623_020--Hb_021422_010 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_000920_280 Hb_000920_280 Hb_006623_020--Hb_000920_280 Hb_006623_020--Hb_003091_010 Hb_000088_200 Hb_000088_200 Hb_000072_140--Hb_000088_200 Hb_000072_140--Hb_011848_010 Hb_004044_020 Hb_004044_020 Hb_000072_140--Hb_004044_020 Hb_000072_140--Hb_003091_010 Hb_004525_100 Hb_004525_100 Hb_000072_140--Hb_004525_100 Hb_031939_010 Hb_031939_010 Hb_000290_020--Hb_031939_010 Hb_001047_100 Hb_001047_100 Hb_000290_020--Hb_001047_100 Hb_000290_020--Hb_011848_010 Hb_008887_050 Hb_008887_050 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.614 37.3972 45.8049 32.2806 121.249 100.935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.8944 60.96 28.7351 26.6302 12.8077

CAGE analysis