Hb_004701_030

Information

Type -
Description -
Location Contig4701: 28316-31947
Sequence    

Annotation

kegg
ID pop:POPTR_0015s00420g
description POPTRDRAFT_775590; hypothetical protein
nr
ID XP_002321943.1
description hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
swissprot
ID Q9LXR0
description Putative F-box/LRR-repeat protein At3g58920 OS=Arabidopsis thaliana GN=At3g58920 PE=3 SV=1
trembl
ID B9IDE7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s00420g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44217: 28033-28596 , PASA_asmbl_44218: 28754-29109 , PASA_asmbl_44219: 30361-30546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004701_030 0.0 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
2 Hb_023001_020 0.0425146501 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
3 Hb_004656_060 0.0620122276 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
4 Hb_003091_010 0.0659248146 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
5 Hb_004678_020 0.0770227117 - - PREDICTED: protein YIF1B [Jatropha curcas]
6 Hb_005895_040 0.077207433 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
7 Hb_000104_080 0.0782585138 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
8 Hb_001754_240 0.0788688633 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
9 Hb_000923_040 0.0790505952 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
10 Hb_001894_030 0.0796153086 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
11 Hb_004374_150 0.0805253717 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
12 Hb_000139_250 0.0825112064 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
13 Hb_001771_120 0.0833137521 - - K+ transport growth defect-like protein [Hevea brasiliensis]
14 Hb_001541_260 0.0838190743 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
15 Hb_000640_220 0.0849080418 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
16 Hb_011848_010 0.0859202942 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
17 Hb_000617_220 0.0864101471 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
18 Hb_000211_110 0.0866401343 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
19 Hb_000803_110 0.0873072367 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
20 Hb_000422_140 0.0881388772 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004701_030 Hb_004701_030 Hb_023001_020 Hb_023001_020 Hb_004701_030--Hb_023001_020 Hb_004656_060 Hb_004656_060 Hb_004701_030--Hb_004656_060 Hb_003091_010 Hb_003091_010 Hb_004701_030--Hb_003091_010 Hb_004678_020 Hb_004678_020 Hb_004701_030--Hb_004678_020 Hb_005895_040 Hb_005895_040 Hb_004701_030--Hb_005895_040 Hb_000104_080 Hb_000104_080 Hb_004701_030--Hb_000104_080 Hb_000139_250 Hb_000139_250 Hb_023001_020--Hb_000139_250 Hb_023001_020--Hb_000104_080 Hb_000923_040 Hb_000923_040 Hb_023001_020--Hb_000923_040 Hb_023001_020--Hb_004678_020 Hb_005701_040 Hb_005701_040 Hb_023001_020--Hb_005701_040 Hb_000422_140 Hb_000422_140 Hb_004656_060--Hb_000422_140 Hb_004656_060--Hb_005895_040 Hb_004656_060--Hb_023001_020 Hb_000640_220 Hb_000640_220 Hb_004656_060--Hb_000640_220 Hb_002587_020 Hb_002587_020 Hb_004656_060--Hb_002587_020 Hb_000617_220 Hb_000617_220 Hb_003091_010--Hb_000617_220 Hb_011848_010 Hb_011848_010 Hb_003091_010--Hb_011848_010 Hb_000359_330 Hb_000359_330 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_004678_020--Hb_005701_040 Hb_000001_180 Hb_000001_180 Hb_004678_020--Hb_000001_180 Hb_003384_030 Hb_003384_030 Hb_004678_020--Hb_003384_030 Hb_010222_080 Hb_010222_080 Hb_004678_020--Hb_010222_080 Hb_002942_220 Hb_002942_220 Hb_004678_020--Hb_002942_220 Hb_005895_040--Hb_000422_140 Hb_009151_020 Hb_009151_020 Hb_005895_040--Hb_009151_020 Hb_002477_130 Hb_002477_130 Hb_005895_040--Hb_002477_130 Hb_002499_070 Hb_002499_070 Hb_005895_040--Hb_002499_070 Hb_000104_080--Hb_000923_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_001584_290 Hb_001584_290 Hb_000104_080--Hb_001584_290 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.03546 4.44682 4.16124 1.97453 11.1152 9.15501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13873 3.721 3.17506 2.39498 1.48209

CAGE analysis