Hb_000923_040

Information

Type -
Description -
Location Contig923: 71153-76740
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12540g
description POPTRDRAFT_665871; hypothetical protein
nr
ID XP_012065054.1
description PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
swissprot
ID O60613
description 15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3
trembl
ID A0A067LJ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62553: 71032-76796
cDNA
(Sanger)
(ID:Location)		 038_J19.ab1: 71032-76641 , 038_N21.ab1: 71032-76637 , 043_N07.ab1: 71032-76627

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000923_040 0.0 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
2 Hb_000104_080 0.0458646187 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
3 Hb_008887_050 0.0676482133 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
4 Hb_000345_530 0.0702726498 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
5 Hb_001584_290 0.0708485593 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
6 Hb_023001_020 0.0709424928 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
7 Hb_001040_040 0.073825853 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
8 Hb_030827_030 0.0780435856 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
9 Hb_021422_010 0.0788128777 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
10 Hb_004701_030 0.0790505952 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
11 Hb_006623_020 0.0796266114 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
12 Hb_003006_060 0.080679311 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
13 Hb_000236_280 0.0808926016 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
14 Hb_002007_350 0.0825381547 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
15 Hb_000640_220 0.0842819545 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
16 Hb_000920_280 0.0855168202 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
17 Hb_008143_030 0.0855946191 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
18 Hb_004241_070 0.0863034676 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
19 Hb_003018_060 0.0880206618 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
20 Hb_001754_240 0.0880910171 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000923_040 Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_000923_040--Hb_000104_080 Hb_008887_050 Hb_008887_050 Hb_000923_040--Hb_008887_050 Hb_000345_530 Hb_000345_530 Hb_000923_040--Hb_000345_530 Hb_001584_290 Hb_001584_290 Hb_000923_040--Hb_001584_290 Hb_023001_020 Hb_023001_020 Hb_000923_040--Hb_023001_020 Hb_001040_040 Hb_001040_040 Hb_000923_040--Hb_001040_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_000104_080--Hb_001584_290 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_000104_080--Hb_023001_020 Hb_143629_010 Hb_143629_010 Hb_008887_050--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_008887_050--Hb_031939_010 Hb_005503_030 Hb_005503_030 Hb_008887_050--Hb_005503_030 Hb_000290_020 Hb_000290_020 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_000345_530--Hb_000104_080 Hb_000345_530--Hb_001040_040 Hb_030827_030 Hb_030827_030 Hb_000345_530--Hb_030827_030 Hb_002249_160 Hb_002249_160 Hb_000345_530--Hb_002249_160 Hb_000976_080 Hb_000976_080 Hb_000345_530--Hb_000976_080 Hb_001584_290--Hb_008143_030 Hb_010222_080 Hb_010222_080 Hb_001584_290--Hb_010222_080 Hb_002587_020 Hb_002587_020 Hb_001584_290--Hb_002587_020 Hb_000640_220 Hb_000640_220 Hb_001584_290--Hb_000640_220 Hb_004701_030 Hb_004701_030 Hb_023001_020--Hb_004701_030 Hb_000139_250 Hb_000139_250 Hb_023001_020--Hb_000139_250 Hb_004678_020 Hb_004678_020 Hb_023001_020--Hb_004678_020 Hb_005701_040 Hb_005701_040 Hb_023001_020--Hb_005701_040 Hb_000395_020 Hb_000395_020 Hb_001040_040--Hb_000395_020 Hb_011915_010 Hb_011915_010 Hb_001040_040--Hb_011915_010 Hb_000868_060 Hb_000868_060 Hb_001040_040--Hb_000868_060 Hb_009252_100 Hb_009252_100 Hb_001040_040--Hb_009252_100 Hb_001040_040--Hb_030827_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.069 45.6617 68.5096 32.9733 155.401 111.685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.4385 49.7162 52.2738 30.9323 32.4144

CAGE analysis